Mercurial > repos > zzhou > peakranger

changeset 0:a4d6663b9616 draft

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Uploaded
author zzhou
date Tue, 27 Nov 2012 12:37:04 -0500
parents
children 6f65c802833e
files tool_dependencies.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Nov 27 12:37:04 2012 -0500
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+    </set_environment>
+    <package name="peakranger" version="1.16">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://downloads.sourceforge.net/project/ranger/PeakRanger-1.16-Linux-x86_64.zip</action>
+                <action type="shell_command">unzip PeakRanger-1.16-Linux-x86_64.zip</action>
+                <action type="move_file">
+                    <source>peakranger</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+ 		<action type="move_directory_files">
+                    <source_directory>gene_annotation_files</source_directory>
+                    <destination_directory>$REPOSITORY_INSTALL_DIR/gene_annotation_files</destination_directory>
+                </action>
+            </actions>
+        </install>
+        <readme></readme>
+    </package>
+</tool_dependency>