Mercurial > repos > zzhou > macs2

changeset 0:60de24e8d162 draft

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Uploaded
author zzhou
date Thu, 29 Nov 2012 14:42:31 -0500
parents
children 3f50073a6778
files tool_dependencies.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Nov 29 14:42:31 2012 -0500
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <!--<set_environment version="1.0">
+        <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+    </set_environment>-->
+    <package name="macs2" version="2.0.10.2">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://ec2-184-73-120-244.compute-1.amazonaws.com/modENCODE_Galaxy/tool_dependencies/macs2/macs2pkg.tar</action>
+                <action type="move_directory_files">
+                    <source>bin</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_directory_files">
+                    <source>lib</source>
+                    <destination>$INSTALL_DIR/lib</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme>
+    </package>
+</tool_dependency>