Mercurial > repos > zzhou > bamedit

changeset 35:f4111113bb5f draft

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Uploaded
author zzhou
date Mon, 26 Nov 2012 11:53:18 -0500
parents e9221f1b9d67
children 7ba3c2c42a24
files bamedit.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bamedit.py	Mon Nov 26 11:48:43 2012 -0500
+++ b/bamedit.py	Mon Nov 26 11:53:18 2012 -0500
@@ -13,7 +13,7 @@
 def main():
     options = simplejson.load( open( sys.argv[1] ) )
 
-    shscript = "%s/split.sh" % os.system("echo $SCRIPT_PATH")
+    shscript = sys.argv[2]
     plscript = "%s/pileup.pl" % os.environ.get('SCRIPT_PATH')
     print shscript
     if(options['action'] == "merge"):