changeset 33:df4eb276977e draft

Uploaded
author zzhou
date Mon, 26 Nov 2012 11:42:59 -0500
parents 2d409855fc47
children e9221f1b9d67
files bamedit.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bamedit.py	Mon Nov 26 11:42:53 2012 -0500
+++ b/bamedit.py	Mon Nov 26 11:42:59 2012 -0500
@@ -13,7 +13,7 @@
 def main():
     options = simplejson.load( open( sys.argv[1] ) )
 
-    shscript = "%s/split.sh" % os.environ.get('SCRIPT_PATH')
+    shscript = sys.argv[2]
     plscript = "%s/pileup.pl" % os.environ.get('SCRIPT_PATH')
     print shscript
     if(options['action'] == "merge"):