Mercurial > repos > zzhou > bamedit
changeset 33:df4eb276977e draft
Uploaded
| author | zzhou |
|---|---|
| date | Mon, 26 Nov 2012 11:42:59 -0500 |
| parents | 2d409855fc47 |
| children | e9221f1b9d67 |
| files | bamedit.py |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/bamedit.py Mon Nov 26 11:42:53 2012 -0500 +++ b/bamedit.py Mon Nov 26 11:42:59 2012 -0500 @@ -13,7 +13,7 @@ def main(): options = simplejson.load( open( sys.argv[1] ) ) - shscript = "%s/split.sh" % os.environ.get('SCRIPT_PATH') + shscript = sys.argv[2] plscript = "%s/pileup.pl" % os.environ.get('SCRIPT_PATH') print shscript if(options['action'] == "merge"):
