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changeset 77:5729fb2ba267 draft

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Uploaded
author zzhou
date Mon, 26 Nov 2012 15:26:15 -0500
parents cd84b55d907d
children 1a815a235ac5
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 21 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Nov 26 15:24:23 2012 -0500
+++ b/tool_dependencies.xml	Mon Nov 26 15:26:15 2012 -0500
@@ -3,25 +3,4 @@
     <set_environment version="1.0">
         <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
     </set_environment>
-    <!--<package name="samtools" version="0.1.12">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
-                <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>samtools</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>misc/maq2sam-long</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>Compiling SAMtools requires the ncurses and zlib development libraries.</readme>
-    </package>-->
 </tool_dependency>