view count_lines_in_file.xml @ 0:72c8df33ec90 default tip

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<tool id="count_lines_in_file" name="Count Lines in file">
    <description>Count Lines in a file</description>
    <command interpreter="perl">count_lines_in_file.pl $input_1 $output</command>

    <inputs>
        <param format="txt" name="input_1" type="data" label="Any text file"></param>
    </inputs>

    <outputs>
        <data format="txt" name="output" />
    </outputs>

    <tests>
        <test>
            <param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/>
            <output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/>
        </test>
    </tests>

    <help>

.. class:: infomark

**What it does**

This tool counts lines in a txt file using the Y.W  alogirtm as described in Carrel et al., 2006 (PMID: 17009873)

*Carrel L, Wetzels Y et al. (2006) Genomic Environment Predicts Expression Patterns on the Human     Inactive X Chromosom
e. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*

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**Example**

- Input file (Source file First)



</help>

</tool>