|
0
|
1 <tool id="count_lines_in_file" name="Count Lines in file">
|
|
|
2 <description>Count Lines in a file</description>
|
|
|
3 <command interpreter="perl">count_lines_in_file.pl $input_1 $output</command>
|
|
|
4
|
|
|
5 <inputs>
|
|
|
6 <param format="txt" name="input_1" type="data" label="Any text file"></param>
|
|
|
7 </inputs>
|
|
|
8
|
|
|
9 <outputs>
|
|
|
10 <data format="txt" name="output" />
|
|
|
11 </outputs>
|
|
|
12
|
|
|
13 <tests>
|
|
|
14 <test>
|
|
|
15 <param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/>
|
|
|
16 <output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/>
|
|
|
17 </test>
|
|
|
18 </tests>
|
|
|
19
|
|
|
20 <help>
|
|
|
21
|
|
|
22 .. class:: infomark
|
|
|
23
|
|
|
24 **What it does**
|
|
|
25
|
|
|
26 This tool counts lines in a txt file using the Y.W alogirtm as described in Carrel et al., 2006 (PMID: 17009873)
|
|
|
27
|
|
|
28 *Carrel L, Wetzels Y et al. (2006) Genomic Environment Predicts Expression Patterns on the Human Inactive X Chromosom
|
|
|
29 e. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
|
|
|
30
|
|
|
31 -----
|
|
|
32
|
|
|
33 **Example**
|
|
|
34
|
|
|
35 - Input file (Source file First)
|
|
|
36
|
|
|
37
|
|
|
38
|
|
|
39 </help>
|
|
|
40
|
|
|
41 </tool> |
