Mercurial > repos > yukke > samtools_v1_1

changeset 3:ff0439a80cdd

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samtools_v1_1.xml
author soh.ishiguro3914@gmail.com
date Fri, 21 Nov 2014 17:06:40 +0900
parents 7019465fef45
children f4b4030709eb
files samtools_v1_1.xml
diffstat 1 files changed, 2 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/samtools_v1_1.xml	Fri Nov 21 16:38:38 2014 +0900
+++ b/samtools_v1_1.xml	Fri Nov 21 17:06:40 2014 +0900
@@ -3,6 +3,7 @@
     <requirement type="package" version="1.1">samtools</requirement>
   </requirements>
   <description>samtools version 1.1.</description>
+  <command interpreter="samtools index">$inputfile</command>
   <inputs>
     <conditional name="command_type">
       <param name="command_type" type="select" label="Execute samtools command">
@@ -34,13 +35,7 @@
         </param>
       </when>
       <when value="index">
-        <param format="bam" name="inputfile" type="data" label="index file"/>
-      </when>
-      <when value="view">
-        <param format="bam" name="inputfile" type="data" label="view file"/>
-      </when>
-      <when value="mpileup">
-        <param format="bam" name="inputfile" type="data" label="mpileup file"/>
+        <param format="bam" name="inputfile" type="data" label="index bam file"/>
       </when>
     </conditional>
   </inputs>