Mercurial > repos > youyuh48 > kraken_tools
diff src/org/Report_Kraken2_on_Zymo.tabular @ 0:5ca43a5fac32 draft
planemo upload for repository https://github.com/youyuh48/galaxy-tools/tree/master/tools/KrakenTools
| author | youyuh48 |
|---|---|
| date | Sun, 02 May 2021 04:46:00 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/src/org/Report_Kraken2_on_Zymo.tabular Sun May 02 04:46:00 2021 +0000 @@ -0,0 +1,194 @@ + 0.10 1 1 U 0 unclassified + 99.90 988 0 R 1 root + 99.90 988 0 R1 131567 cellular organisms + 99.90 988 0 D 2 Bacteria + 65.62 649 0 D1 1783272 Terrabacteria group + 65.62 649 0 P 1239 Firmicutes + 65.62 649 1 C 91061 Bacilli + 49.95 494 0 O 1385 Bacillales + 19.72 195 0 F 186817 Bacillaceae + 19.51 193 6 G 1386 Bacillus + 13.95 138 2 G1 653685 Bacillus subtilis group + 9.71 96 4 G2 1938374 Bacillus amyloliquefaciens group + 7.79 77 56 S 492670 Bacillus velezensis + 1.92 19 19 S1 1458206 Bacillus velezensis NJN-6 + 0.20 2 2 S1 1449088 Bacillus velezensis TrigoCor1448 + 1.52 15 12 S 1390 Bacillus amyloliquefaciens + 0.30 3 3 S1 1034836 Bacillus amyloliquefaciens XH7 + 3.84 38 12 S 1423 Bacillus subtilis + 1.11 11 5 S1 135461 Bacillus subtilis subsp. subtilis + 0.61 6 6 S2 535024 Bacillus subtilis subsp. subtilis str. SMY + 0.61 6 6 S1 86029 Bacillus subtilis subsp. natto + 0.40 4 4 S1 483913 Bacillus subtilis subsp. inaquosorum + 0.30 3 0 S1 96241 Bacillus subtilis subsp. spizizenii + 0.30 3 3 S2 1052585 Bacillus subtilis subsp. spizizenii TU-B-10 + 0.20 2 2 S1 936156 Bacillus subtilis BSn5 + 0.10 1 1 S 1402 Bacillus licheniformis + 0.10 1 1 S 1648923 Bacillus paralicheniformis + 4.65 46 5 G1 86661 Bacillus cereus group + 1.72 17 1 S 1396 Bacillus cereus + 1.42 14 14 S1 1003239 Bacillus cereus C1L + 0.20 2 2 S1 269801 Bacillus cereus G9241 + 1.31 13 8 S 1428 Bacillus thuringiensis + 0.20 2 0 S1 29339 Bacillus thuringiensis serovar kurstaki + 0.20 2 2 S2 1279365 Bacillus thuringiensis serovar kurstaki str. HD73 + 0.20 2 2 S1 1195464 Bacillus thuringiensis MC28 + 0.10 1 1 S1 1441 Bacillus thuringiensis serovar morrisoni + 1.11 11 11 S 1392 Bacillus anthracis + 0.10 1 1 S 1783501 Bacillus freudenreichii + 0.10 1 1 S 1547283 Bacillus weihaiensis + 0.10 1 0 G1 185979 unclassified Bacillus + 0.10 1 1 S 2049935 Bacillus sp. Lzh-5 + 0.10 1 0 G 182709 Oceanobacillus + 0.10 1 0 G1 2630292 unclassified Oceanobacillus + 0.10 1 1 S 2052660 Oceanobacillus sp. 160 + 0.10 1 0 F1 197483 unclassified Bacillaceae + 0.10 1 1 S 2594883 Bacillaceae bacterium TKL69 + 17.49 173 0 F 90964 Staphylococcaceae + 17.49 173 7 G 1279 Staphylococcus + 15.37 152 80 S 1280 Staphylococcus aureus + 6.07 60 34 S1 46170 Staphylococcus aureus subsp. aureus + 0.51 5 5 S2 1006543 Staphylococcus aureus subsp. aureus T0131 + 0.51 5 5 S2 1074919 Staphylococcus aureus subsp. aureus ST228 + 0.40 4 4 S2 282458 Staphylococcus aureus subsp. aureus MRSA252 + 0.30 3 3 S2 1381115 Staphylococcus aureus subsp. aureus Tager 104 + 0.30 3 3 S2 548470 Staphylococcus aureus subsp. aureus MN8 + 0.30 3 3 S2 523796 Staphylococcus aureus subsp. aureus ST398 + 0.20 2 2 S2 1392476 Staphylococcus aureus subsp. aureus 6850 + 0.10 1 1 S2 282459 Staphylococcus aureus subsp. aureus MSSA476 + 1.01 10 10 S1 1229492 Staphylococcus aureus 08BA02176 + 0.20 2 2 S1 273036 Staphylococcus aureus RF122 + 0.40 4 4 S 29380 Staphylococcus caprae + 0.20 2 2 S 1290 Staphylococcus hominis + 0.20 2 0 G1 91994 unclassified Staphylococcus + 0.20 2 2 S 1715860 Staphylococcus sp. AntiMn-1 + 0.10 1 0 S 1283 Staphylococcus haemolyticus + 0.10 1 1 S1 279808 Staphylococcus haemolyticus JCSC1435 + 0.10 1 1 S 643214 Staphylococcus stepanovicii + 0.10 1 1 S 29388 Staphylococcus capitis + 0.10 1 1 S 246432 Staphylococcus equorum + 0.10 1 1 S 214473 Staphylococcus nepalensis + 0.10 1 1 S 150056 Staphylococcus fleurettii + 12.74 126 0 F 186820 Listeriaceae + 12.74 126 9 G 1637 Listeria + 11.73 116 101 S 1639 Listeria monocytogenes + 0.71 7 7 S1 882095 Listeria monocytogenes ATCC 19117 + 0.30 3 3 S1 1027396 Listeria monocytogenes str. Scott A + 0.30 3 3 S1 882094 Listeria monocytogenes L312 + 0.10 1 1 S1 932919 Listeria monocytogenes SLCC2755 + 0.10 1 1 S1 879090 Listeria monocytogenes SLCC7179 + 0.10 1 1 S 1006155 Listeria weihenstephanensis + 15.57 154 2 O 186826 Lactobacillales + 10.62 105 0 F 33958 Lactobacillaceae + 10.62 105 3 G 1578 Lactobacillus + 10.31 102 100 S 1613 Lactobacillus fermentum + 0.20 2 2 S1 712938 Lactobacillus fermentum CECT 5716 + 4.35 43 0 F 81852 Enterococcaceae + 4.15 41 1 G 1350 Enterococcus + 3.13 31 17 S 1351 Enterococcus faecalis + 1.31 13 13 S1 565651 Enterococcus faecalis ARO1/DG + 0.10 1 1 S1 1287066 Enterococcus faecalis DENG1 + 0.91 9 9 S 1352 Enterococcus faecium + 0.20 2 0 G 2737 Vagococcus + 0.20 2 0 G1 2648499 unclassified Vagococcus + 0.20 2 2 S 2571750 Vagococcus sp. MN-17 + 0.40 4 0 F 1300 Streptococcaceae + 0.40 4 2 G 1301 Streptococcus + 0.10 1 0 G1 119603 Streptococcus dysgalactiae group + 0.10 1 0 S 1334 Streptococcus dysgalactiae + 0.10 1 1 S1 119602 Streptococcus dysgalactiae subsp. equisimilis + 0.10 1 1 S 1314 Streptococcus pyogenes + 34.28 339 0 P 1224 Proteobacteria + 34.28 339 0 C 1236 Gammaproteobacteria + 27.60 273 0 O 91347 Enterobacterales + 27.60 273 10 F 543 Enterobacteriaceae + 15.57 154 0 G 561 Escherichia + 15.57 154 112 S 562 Escherichia coli + 0.91 9 4 S1 83333 Escherichia coli K-12 + 0.30 3 3 S2 316407 Escherichia coli str. K-12 substr. W3110 + 0.20 2 2 S2 879462 Escherichia coli str. K-12 substr. MG1655star + 0.81 8 6 S1 83334 Escherichia coli O157:H7 + 0.10 1 1 S2 155864 Escherichia coli O157:H7 str. EDL933 + 0.10 1 1 S2 502346 Escherichia coli O157:H7 str. TW14588 + 0.40 4 4 S1 362663 Escherichia coli 536 + 0.40 4 4 S1 1050617 Escherichia coli UMNF18 + 0.30 3 3 S1 316435 Escherichia coli Nissle 1917 + 0.30 3 0 S1 861906 Escherichia coli O44:H18 + 0.30 3 3 S2 216592 Escherichia coli 042 + 0.20 2 2 S1 405955 Escherichia coli APEC O1 + 0.20 2 1 S1 1038927 Escherichia coli O104:H4 + 0.10 1 1 S2 1133852 Escherichia coli O104:H4 str. 2011C-3493 + 0.20 2 2 S1 2048781 Escherichia coli O27:H7 + 0.10 1 0 S1 1055539 Escherichia coli O91 + 0.10 1 1 S2 1055545 Escherichia coli O91 str. RM7190 + 0.10 1 1 S1 1322345 Escherichia coli ATCC 25922 + 0.10 1 1 S1 331112 Escherichia coli HS + 0.10 1 1 S1 1392858 Escherichia coli M12 + 0.10 1 1 S1 1392854 Escherichia coli M8 + 8.90 88 2 G 590 Salmonella + 8.59 85 6 S 28901 Salmonella enterica + 7.79 77 5 S1 59201 Salmonella enterica subsp. enterica + 2.33 23 23 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- + 0.71 7 7 S2 29474 Salmonella enterica subsp. enterica serovar California + 0.61 6 6 S2 286783 Salmonella enterica subsp. enterica serovar Indiana + 0.61 6 6 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis + 0.51 5 5 S2 90371 Salmonella enterica subsp. enterica serovar Typhimurium + 0.30 3 0 S2 115981 Salmonella enterica subsp. enterica serovar Montevideo + 0.10 1 1 S3 763921 Salmonella enterica subsp. enterica serovar Montevideo str. 42N + 0.10 1 1 S3 1454604 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1904 + 0.10 1 1 S3 1454598 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1901 + 0.30 3 2 S2 58712 Salmonella enterica subsp. enterica serovar Anatum + 0.10 1 1 S3 1399029 Salmonella enterica subsp. enterica serovar Anatum str. CFSAN003961 + 0.30 3 1 S2 28150 Salmonella enterica subsp. enterica serovar Senftenberg + 0.20 2 2 S3 1399047 Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 + 0.20 2 2 S2 595 Salmonella enterica subsp. enterica serovar Infantis + 0.20 2 2 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg + 0.10 1 0 S2 108619 Salmonella enterica subsp. enterica serovar Newport + 0.10 1 1 S3 930779 Salmonella enterica subsp. enterica serovar Newport str. Levine 15 + 0.10 1 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld + 0.10 1 1 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 + 0.10 1 1 S2 605 Salmonella enterica subsp. enterica serovar Pullorum + 0.10 1 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly + 0.10 1 1 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 + 0.10 1 1 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul + 0.10 1 1 S2 90370 Salmonella enterica subsp. enterica serovar Typhi + 0.10 1 0 S2 1243585 Salmonella enterica subsp. enterica serovar Ouakam + 0.10 1 1 S3 1243586 Salmonella enterica subsp. enterica serovar Ouakam str. SA20034636 + 0.10 1 0 S2 604 Salmonella enterica subsp. enterica serovar Gallinarum/pullorum + 0.10 1 1 S3 1225522 Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67 + 0.10 1 1 S2 98360 Salmonella enterica subsp. enterica serovar Dublin + 0.10 1 1 S2 2021403 Salmonella enterica subsp. enterica serovar Adjame + 0.10 1 1 S2 119912 Salmonella enterica subsp. enterica serovar Choleraesuis + 0.10 1 1 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- + 0.20 2 0 S1 59202 Salmonella enterica subsp. salamae + 0.20 2 0 S2 1243601 Salmonella enterica subsp. salamae serovar 55:k:z39 + 0.20 2 2 S3 1243602 Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K + 0.10 1 0 G1 2614656 unclassified Salmonella + 0.10 1 1 S 2664291 Salmonella sp. HNK130 + 1.62 16 0 G 570 Klebsiella + 1.42 14 9 S 573 Klebsiella pneumoniae + 0.30 3 3 S1 72407 Klebsiella pneumoniae subsp. pneumoniae + 0.20 2 2 S1 1049565 Klebsiella pneumoniae KCTC 2242 + 0.10 1 1 S 571 Klebsiella oxytoca + 0.10 1 1 S 1134687 Klebsiella michiganensis + 0.40 4 0 G 547 Enterobacter + 0.20 2 0 G1 354276 Enterobacter cloacae complex + 0.10 1 1 S 550 Enterobacter cloacae + 0.10 1 1 S 158836 Enterobacter hormaechei + 0.20 2 2 S 881260 Enterobacter bugandensis + 0.10 1 1 G 620 Shigella + 6.67 66 0 O 72274 Pseudomonadales + 6.67 66 0 F 135621 Pseudomonadaceae + 6.67 66 4 G 286 Pseudomonas + 5.46 54 1 G1 136841 Pseudomonas aeruginosa group + 5.36 53 35 S 287 Pseudomonas aeruginosa + 0.81 8 8 S1 1408273 Pseudomonas aeruginosa LESB65 + 0.40 4 4 S1 1408272 Pseudomonas aeruginosa LES431 + 0.40 4 4 S1 1408275 Pseudomonas aeruginosa LESlike4 + 0.10 1 1 S1 1279008 Pseudomonas aeruginosa PA1R + 0.10 1 1 S1 1352355 Pseudomonas aeruginosa c7447m + 0.71 7 0 G1 2583993 unclassified Pseudomonas + 0.61 6 6 S 2559074 Pseudomonas sp. S150 + 0.10 1 1 S 2662033 Pseudomonas sp. 14181154 + 0.10 1 0 G1 136842 Pseudomonas chlororaphis group + 0.10 1 1 S 47884 Pseudomonas taetrolens