Mercurial > repos > ynewton > plot_distribution

changeset 1:ec909c712764 draft

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Uploaded
author ynewton
date Fri, 05 Oct 2012 02:09:44 -0400
parents d2655e17c24d
children 10b99fb90171
files plot_distribution.xml
diffstat 1 files changed, 17 insertions(+), 0 deletions(-) [+]
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+++ b/plot_distribution.xml	Fri Oct 05 02:09:44 2012 -0400
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+<tool id="matrix_normalize" name="Plot Distributuion" version="1.0.0">
+  <description>Plot Distribution</description>
+  <command interpreter="Rscript">plot_distribution.r $tableData $outfile
+  </command>
+  <inputs>
+	  <param name="tableData" format="tabular" type="data" label="Input data"/>
+  </inputs>
+  <outputs>
+      <data name="outfile" format="tabular"/>
+  </outputs>
+  <help>
+**What it does**
+
+This tool outputs histogram and distribution of tabular data. Assumes that the first row contains column headers and the first column contains row annotations (e.g. gene names). Considers everything else as data. Data can be either a single column or a matrix of values. Produces a pdf file. 
+
+  </help>   
+</tool>
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