Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam
changeset 8:f10575563c5d
Uploaded
author | yhoogstrate |
---|---|
date | Tue, 17 Dec 2013 06:33:19 -0500 |
parents | 467ace7bd807 |
children | bd04d35e443d |
files | tool_dependencies.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Tue Dec 17 05:27:55 2013 -0500 +++ b/tool_dependencies.xml Tue Dec 17 06:33:19 2013 -0500 @@ -3,9 +3,9 @@ <package name="samtools-mpileup-parallel" version="1.0.19"> <install version="1.0"> <actions> - <action type="shell_command">svn checkout https://github.com/mydatascience/parallel-mpileup/trunk samtools-mpileup-parallel && cd samtools-mpileup-parallel && cd $(ls |grep samtools-) && make && cp samtools ../ && cd .. && mv samtools-mpileup-parallel samtools-mpileup-parallel-dir && mv samtools samtools-mpileup-parallel</action> + <action type="shell_command">svn checkout https://github.com/mydatascience/parallel-mpileup/trunk samtools-mpileup-parallel && cd samtools-mpileup-parallel && cd $(ls |grep samtools-) && make && cp samtools ../samtools-mpileup-parallel</action> <action type="move_file"> - <source>samtools-mpileup-parallel</source> + <source>samtools-mpileup-parallel/samtools-mpileup-parallel</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment">