Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam

changeset 74:f04ca3ca089f draft

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Uploaded
author yhoogstrate
date Wed, 21 May 2014 04:10:41 -0400
parents e263cc6f89bd
children c09dd61c0239
files samtools-parallel-mpileup.xml tool_dependencies.xml varscan_mpileup2snp_from_bam.xml
diffstat 3 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/samtools-parallel-mpileup.xml	Wed May 21 04:09:14 2014 -0400
+++ b/samtools-parallel-mpileup.xml	Wed May 21 04:10:41 2014 -0400
@@ -3,7 +3,7 @@
 	<description>Samtools mpileup (supporting parallelization)</description>
 	<requirements>
 		<requirement type="package" version="5.9">ncurses</requirement>
-		<requirement type="package" version="0.1.19">samtools_parallel_mpileup</requirement>
+		<requirement type="package" version="0.1.19a">samtools_parallel_mpileup_0_1_19a</requirement>
 		<requirement type="package" version="0.1.19">package_samtools_0_1_19</requirement>
 	</requirements>
 	<command>
--- a/tool_dependencies.xml	Wed May 21 04:09:14 2014 -0400
+++ b/tool_dependencies.xml	Wed May 21 04:10:41 2014 -0400
@@ -5,7 +5,7 @@
 		<repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
 	</package>
 	
-	<package name="samtools_parallel_mpileup" version="0.1.19">
+	<package name="samtools_parallel_mpileup_0_1_19a" version="0.1.19a">
 		<install version="1.0">
 			<actions>
 				<action type="set_environment_for_install">
--- a/varscan_mpileup2snp_from_bam.xml	Wed May 21 04:09:14 2014 -0400
+++ b/varscan_mpileup2snp_from_bam.xml	Wed May 21 04:10:41 2014 -0400
@@ -3,7 +3,7 @@
 	<description>VarScan2 SNP/SNV detection; directly reading *.bam file(s) &amp; using parallel mpileup generation, to avoid unncessairy I/O overhead and increase performance.</description>
 	<requirements>
 		<requirement type="package" version="5.9">ncurses</requirement>
-		<requirement type="package" version="0.1.19">samtools_parallel_mpileup</requirement>
+		<requirement type="package" version="0.1.19a">samtools_parallel_mpileup_0_1_19a</requirement>
 		<requirement type="package" version="2.3.6">varscan</requirement>
 		<requirement type="package" version="0.1.19">package_samtools_0_1_19</requirement>
 	</requirements>