changeset 34:7946b09020e0

Uploaded
author yhoogstrate
date Tue, 18 Feb 2014 05:29:59 -0500
parents 3f62f407068e
children 3bb39a9058d9
files varscan_mpileup2snp_from_bam.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/varscan_mpileup2snp_from_bam.xml	Tue Feb 18 05:29:50 2014 -0500
+++ b/varscan_mpileup2snp_from_bam.xml	Tue Feb 18 05:29:59 2014 -0500
@@ -78,7 +78,7 @@
 			
 			 | java
 					 -Xmx64G
-					 -jar VarScan.v2.3.6.jar
+					 -jar \$JAVA_JAR_PATH/VarScan.v2.3.6.jar
 						 mpileup2snp
 			 
 			#if $extended_parameters.parameters == "extended"