Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam

changeset 7:467ace7bd807

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Uploaded
author yhoogstrate
date Tue, 17 Dec 2013 05:27:55 -0500
parents be221fb9cabf
children f10575563c5d
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Dec 17 05:23:00 2013 -0500
+++ b/tool_dependencies.xml	Tue Dec 17 05:27:55 2013 -0500
@@ -3,10 +3,10 @@
 	<package name="samtools-mpileup-parallel" version="1.0.19">
 		<install version="1.0">
 			<actions>
-				<action type="shell_command">svn checkout https://github.com/mydatascience/parallel-mpileup/trunk samtools-mpileup-parallel &amp;&amp; cd samtools-mpileup-parallel &amp;&amp; cd $(ls |grep samtools-) &amp;&amp; make &amp;&amp; cp samtools ../</action>
+				<action type="shell_command">svn checkout https://github.com/mydatascience/parallel-mpileup/trunk samtools-mpileup-parallel &amp;&amp; cd samtools-mpileup-parallel &amp;&amp; cd $(ls |grep samtools-) &amp;&amp; make &amp;&amp; cp samtools ../ &amp;&amp; cd .. &amp;&amp; mv samtools-mpileup-parallel samtools-mpileup-parallel-dir &amp;&amp; mv samtools samtools-mpileup-parallel</action>
 				<action type="move_file">
-					<source>samtools</source>
-					<destination>$INSTALL_DIR/bin/samtools-mpileup-parallel</destination>
+					<source>samtools-mpileup-parallel</source>
+					<destination>$INSTALL_DIR/bin</destination>
 				</action>
 				<action type="set_environment">
 					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>