Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam

changeset 81:404583a3d754 draft

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Uploaded
author yhoogstrate
date Wed, 11 Jun 2014 05:57:04 -0400
parents 5272ffe31456
children bf44ae0d9264
files varscan_mpileup2snp.xml varscan_mpileup2snp_from_bam.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/varscan_mpileup2snp.xml	Wed Jun 11 05:25:06 2014 -0400
+++ b/varscan_mpileup2snp.xml	Wed Jun 11 05:57:04 2014 -0400
@@ -21,7 +21,7 @@
 				 $varscan_variants 
 		#end if
 		
-		#if $varscan_output == "vcf"
+		#if $varscan_output == "vcf" or $varscan_output.value == "vcf"
 		 --output-vcf 1 
 		#end if
 		
--- a/varscan_mpileup2snp_from_bam.xml	Wed Jun 11 05:25:06 2014 -0400
+++ b/varscan_mpileup2snp_from_bam.xml	Wed Jun 11 05:57:04 2014 -0400
@@ -101,7 +101,7 @@
 					 $varscan_variants 
 			#end if
 			
-			#if $varscan_output == "vcf"
+			#if $varscan_output == "vcf" or $varscan_output.value == "vcf"
 			 --output-vcf 1 
 			#end if