# HG changeset patch
# User yhoogstrate
# Date 1402480624 14400
# Node ID 404583a3d754c157f0cd3ba12fe8f6e65a545804
# Parent  5272ffe31456de7b7ca8191eb4c71e922ef5bcc5
Uploaded

diff -r 5272ffe31456 -r 404583a3d754 varscan_mpileup2snp.xml
--- a/varscan_mpileup2snp.xml	Wed Jun 11 05:25:06 2014 -0400
+++ b/varscan_mpileup2snp.xml	Wed Jun 11 05:57:04 2014 -0400
@@ -21,7 +21,7 @@
 				 $varscan_variants 
 		#end if
 		
-		#if $varscan_output == "vcf"
+		#if $varscan_output == "vcf" or $varscan_output.value == "vcf"
 		 --output-vcf 1 
 		#end if
 		
diff -r 5272ffe31456 -r 404583a3d754 varscan_mpileup2snp_from_bam.xml
--- a/varscan_mpileup2snp_from_bam.xml	Wed Jun 11 05:25:06 2014 -0400
+++ b/varscan_mpileup2snp_from_bam.xml	Wed Jun 11 05:57:04 2014 -0400
@@ -101,7 +101,7 @@
 					 $varscan_variants 
 			#end if
 			
-			#if $varscan_output == "vcf"
+			#if $varscan_output == "vcf" or $varscan_output.value == "vcf"
 			 --output-vcf 1 
 			#end if