Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam
changeset 81:404583a3d754 draft
Uploaded
author | yhoogstrate |
---|---|
date | Wed, 11 Jun 2014 05:57:04 -0400 |
parents | 5272ffe31456 |
children | bf44ae0d9264 |
files | varscan_mpileup2snp.xml varscan_mpileup2snp_from_bam.xml |
diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/varscan_mpileup2snp.xml Wed Jun 11 05:25:06 2014 -0400 +++ b/varscan_mpileup2snp.xml Wed Jun 11 05:57:04 2014 -0400 @@ -21,7 +21,7 @@ $varscan_variants #end if - #if $varscan_output == "vcf" + #if $varscan_output == "vcf" or $varscan_output.value == "vcf" --output-vcf 1 #end if
--- a/varscan_mpileup2snp_from_bam.xml Wed Jun 11 05:25:06 2014 -0400 +++ b/varscan_mpileup2snp_from_bam.xml Wed Jun 11 05:57:04 2014 -0400 @@ -101,7 +101,7 @@ $varscan_variants #end if - #if $varscan_output == "vcf" + #if $varscan_output == "vcf" or $varscan_output.value == "vcf" --output-vcf 1 #end if