Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam
changeset 61:0bab34a58764 draft
Uploaded
author | yhoogstrate |
---|---|
date | Wed, 05 Mar 2014 10:23:06 -0500 |
parents | cb0f5c219244 |
children | 34b5f8c5c16e |
files | varscan_mpileup2snp.xml |
diffstat | 1 files changed, 2 insertions(+), 4 deletions(-) [+] |
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--- a/varscan_mpileup2snp.xml Wed Mar 05 10:10:54 2014 -0500 +++ b/varscan_mpileup2snp.xml Wed Mar 05 10:23:06 2014 -0500 @@ -23,9 +23,7 @@ #end if #if $varscan_output_vcf - --output-vcf 0 - #else - --output-vcf 0 + --output-vcf 1 #end if 2> stderr.txt @@ -34,7 +32,7 @@ </command> <inputs> - <param format="mpileup,pileup" name="mpileup_input" type="data" label="Alignment file" help="Mapped reads in mpileup format."/> + <param format="mpileup" name="mpileup_input" type="data" label="Alignment file" help="Mapped reads in mpileup format."/> <conditional name="extended_parameters"> <param name="parameters" type="select" label="VarScan parameters" help="For more advanced VarScan settings.">