Mercurial > repos > yhoogstrate > segmentation_fold
changeset 6:a61db7f9d80b draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 30448244448344cd393d444ef23b27318165cbdb-dirty
| author | yhoogstrate |
|---|---|
| date | Fri, 04 Mar 2016 05:58:06 -0500 |
| parents | fd7f0bf0f5b6 |
| children | bff6e82064da |
| files | energy-estimation-utility.xml scan-for-segments.xml tool_dependencies.xml |
| diffstat | 3 files changed, 10 insertions(+), 4 deletions(-) [+] |
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--- a/energy-estimation-utility.xml Wed Mar 02 08:56:00 2016 -0500 +++ b/energy-estimation-utility.xml Fri Mar 04 05:58:06 2016 -0500 @@ -1,8 +1,9 @@ -<tool id="energy_estimation_utility" name="energy-estimation-utility" version="1.6.2-0"> +<tool id="energy_estimation_utility" name="energy-estimation-utility" version="1.6.2-1"> <description>Estimate the maximal energy a segment needs to assign to become part of the optimal structure using segmentation-fold</description> <requirements> <requirement type="package" version="1.6.2">segmentation-fold</requirement> + <requirement type="package" version="2.7.10">python</requirement> </requirements> <stdio></stdio>
--- a/scan-for-segments.xml Wed Mar 02 08:56:00 2016 -0500 +++ b/scan-for-segments.xml Fri Mar 04 05:58:06 2016 -0500 @@ -1,8 +1,9 @@ -<tool id="scan_for_segments" name="scan-for-segments" version="1.6.2-0"> +<tool id="scan_for_segments" name="scan-for-segments" version="1.6.2-1"> <description>Scan for the presence of segments in sequences using segmentation-fold</description> <requirements> <requirement type="package" version="1.6.2">segmentation-fold</requirement> + <requirement type="package" version="2.7.10">python</requirement> </requirements> <stdio></stdio> @@ -12,7 +13,7 @@ <command><![CDATA[ scan-for-segments -T \${GALAXY_SLOTS:-4} - #if $parameters.use_custom_xml == "true" + #if str($parameters.use_custom_xml) == "true" -x "${parameters.input_xml}" #else -x "\$SEGMENTATION_FOLD_DEFAULT_XML"
--- a/tool_dependencies.xml Wed Mar 02 08:56:00 2016 -0500 +++ b/tool_dependencies.xml Fri Mar 04 05:58:06 2016 -0500 @@ -1,6 +1,10 @@ <?xml version="1.0"?> <tool_dependency> <package name="segmentation-fold" version="1.6.2"> - <repository changeset_revision="34af794144dc" name="package_segmentation_fold_1_6_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="533fa0d89db0" name="package_segmentation_fold_1_6_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + + <package name="python" version="2.7.10"> + <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>