# HG changeset patch
# User yhoogstrate
# Date 1457089086 18000
# Node ID a61db7f9d80b64dcb809a1eaff81c81014090d36
# Parent  fd7f0bf0f5b6f0e131e429fadc2002225a43c884
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 30448244448344cd393d444ef23b27318165cbdb-dirty

diff -r fd7f0bf0f5b6 -r a61db7f9d80b energy-estimation-utility.xml
--- a/energy-estimation-utility.xml	Wed Mar 02 08:56:00 2016 -0500
+++ b/energy-estimation-utility.xml	Fri Mar 04 05:58:06 2016 -0500
@@ -1,8 +1,9 @@
-<tool id="energy_estimation_utility" name="energy-estimation-utility" version="1.6.2-0">
+<tool id="energy_estimation_utility" name="energy-estimation-utility" version="1.6.2-1">
     <description>Estimate the maximal energy a segment needs to assign to become part of the optimal structure using segmentation-fold</description>
     
     <requirements>
         <requirement type="package" version="1.6.2">segmentation-fold</requirement>
+        <requirement type="package" version="2.7.10">python</requirement>
     </requirements>
     
     <stdio></stdio>
diff -r fd7f0bf0f5b6 -r a61db7f9d80b scan-for-segments.xml
--- a/scan-for-segments.xml	Wed Mar 02 08:56:00 2016 -0500
+++ b/scan-for-segments.xml	Fri Mar 04 05:58:06 2016 -0500
@@ -1,8 +1,9 @@
-<tool id="scan_for_segments" name="scan-for-segments" version="1.6.2-0">
+<tool id="scan_for_segments" name="scan-for-segments" version="1.6.2-1">
     <description>Scan for the presence of segments in sequences using segmentation-fold</description>
     
     <requirements>
         <requirement type="package" version="1.6.2">segmentation-fold</requirement>
+        <requirement type="package" version="2.7.10">python</requirement>
     </requirements>
     
     <stdio></stdio>
@@ -12,7 +13,7 @@
     <command><![CDATA[
         scan-for-segments
             -T \${GALAXY_SLOTS:-4}
-            #if $parameters.use_custom_xml == "true"
+            #if str($parameters.use_custom_xml) == "true"
                 -x "${parameters.input_xml}"
             #else
                 -x "\$SEGMENTATION_FOLD_DEFAULT_XML"
diff -r fd7f0bf0f5b6 -r a61db7f9d80b tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Mar 02 08:56:00 2016 -0500
+++ b/tool_dependencies.xml	Fri Mar 04 05:58:06 2016 -0500
@@ -1,6 +1,10 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="segmentation-fold" version="1.6.2">
-        <repository changeset_revision="34af794144dc" name="package_segmentation_fold_1_6_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="533fa0d89db0" name="package_segmentation_fold_1_6_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>