Mercurial > repos > yhoogstrate > segmentation_fold

diff scan-for-segments.xml @ 7:bff6e82064da draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 4a09ba36d8feeea3b61ab5b2b113aac7f34d389f-dirty
author yhoogstrate
date Thu, 10 Mar 2016 03:22:58 -0500
parents a61db7f9d80b
children 8dcf7ca46c72
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line diff
--- a/scan-for-segments.xml	Fri Mar 04 05:58:06 2016 -0500
+++ b/scan-for-segments.xml	Thu Mar 10 03:22:58 2016 -0500
@@ -13,10 +13,11 @@
     <command><![CDATA[
         scan-for-segments
             -T \${GALAXY_SLOTS:-4}
+            -x
             #if str($parameters.use_custom_xml) == "true"
-                -x "${parameters.input_xml}"
+                "${parameters.input_xml}"
             #else
-                -x "\$SEGMENTATION_FOLD_DEFAULT_XML"
+                "\$SEGMENTATION_FOLD_DEFAULT_XML"
             #end if
             -p "in-depth"
             "${input_fasta}"