Mercurial > repos > yhoogstrate > segmentation_fold
comparison scan-for-segments.xml @ 7:bff6e82064da draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 4a09ba36d8feeea3b61ab5b2b113aac7f34d389f-dirty
| author | yhoogstrate |
|---|---|
| date | Thu, 10 Mar 2016 03:22:58 -0500 |
| parents | a61db7f9d80b |
| children | 8dcf7ca46c72 |
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| 6:a61db7f9d80b | 7:bff6e82064da |
|---|---|
| 11 <version_command>segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</version_command> | 11 <version_command>segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</version_command> |
| 12 | 12 |
| 13 <command><![CDATA[ | 13 <command><![CDATA[ |
| 14 scan-for-segments | 14 scan-for-segments |
| 15 -T \${GALAXY_SLOTS:-4} | 15 -T \${GALAXY_SLOTS:-4} |
| 16 -x | |
| 16 #if str($parameters.use_custom_xml) == "true" | 17 #if str($parameters.use_custom_xml) == "true" |
| 17 -x "${parameters.input_xml}" | 18 "${parameters.input_xml}" |
| 18 #else | 19 #else |
| 19 -x "\$SEGMENTATION_FOLD_DEFAULT_XML" | 20 "\$SEGMENTATION_FOLD_DEFAULT_XML" |
| 20 #end if | 21 #end if |
| 21 -p "in-depth" | 22 -p "in-depth" |
| 22 "${input_fasta}" | 23 "${input_fasta}" |
| 23 | 24 |
| 24 > $output_list | 25 > $output_list |