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diff test-data/SNORD48-revised.scan-for-segments.txt @ 13:63156f020cd3 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit fb0bbb26638c0185ef16efa2e0ac3952d671b711-dirty
author yhoogstrate
date Thu, 19 May 2016 04:31:29 -0400
parents 487f438da099
children 660c25c66c8a
line wrap: on
line diff
--- a/test-data/SNORD48-revised.scan-for-segments.txt	Fri May 06 06:08:36 2016 -0400
+++ b/test-data/SNORD48-revised.scan-for-segments.txt	Thu May 19 04:31:29 2016 -0400
@@ -1,56 +1,56 @@
->SNORD48 revised 2 extra bases on 5 end x Kt-7 G2nA SAM riboswitch H. marismortui
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 G2nA SAM riboswitch (H. marismortui)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-7 T. thermophilus
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-7 E. coli
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (E. coli)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-7 D. radiodurans
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (D. radiodurans)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-11 T. thermophilus
+>SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-11.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-15.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-23.tth
+>SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-23.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-23.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-38.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-38.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-42.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-42.tth
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-42.dra
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-42.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-46.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-46.tth
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-46.dra
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-46.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-58.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-U4a.hsa
+>SNORD48 revised (2 extra bases on 5' end) x Kt-U4a.hsa
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-U4b.hsa
+>SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-CD-box.CGU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-CD-box.UGU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-L30e.sce
+>SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-SAM-ribo.tte
+>SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-T-box.bsu
+>SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-c-di-GMP-II.cac
+>SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised 2 extra bases on 5 end x Kt-G2nA-SAM-riboswitch T. tengcongensi
+>SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC