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comparison test-data/SNORD48-revised.scan-for-segments.txt @ 13:63156f020cd3 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit fb0bbb26638c0185ef16efa2e0ac3952d671b711-dirty
author yhoogstrate
date Thu, 19 May 2016 04:31:29 -0400
parents 487f438da099
children 660c25c66c8a
comparison
equal deleted inserted replaced
12:c690aa928d3d 13:63156f020cd3
1 >SNORD48 revised 2 extra bases on 5 end x Kt-7 G2nA SAM riboswitch H. marismortui 1 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 G2nA SAM riboswitch (H. marismortui)
2 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 2 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
3 >SNORD48 revised 2 extra bases on 5 end x Kt-7 T. thermophilus 3 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus)
4 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 4 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
5 >SNORD48 revised 2 extra bases on 5 end x Kt-7 E. coli 5 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (E. coli)
6 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 6 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
7 >SNORD48 revised 2 extra bases on 5 end x Kt-7 D. radiodurans 7 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (D. radiodurans)
8 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 8 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
9 >SNORD48 revised 2 extra bases on 5 end x Kt-11 T. thermophilus 9 >SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus)
10 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 10 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
11 >SNORD48 revised 2 extra bases on 5 end x Kt-11.eco 11 >SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco
12 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 12 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
13 >SNORD48 revised 2 extra bases on 5 end x Kt-15.hma 13 >SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma
14 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 14 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
15 >SNORD48 revised 2 extra bases on 5 end x Kt-23.tth 15 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth
16 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 16 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
17 >SNORD48 revised 2 extra bases on 5 end x Kt-23.eco 17 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.eco
18 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 18 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
19 >SNORD48 revised 2 extra bases on 5 end x Kt-38.hma 19 >SNORD48 revised (2 extra bases on 5' end) x Kt-38.hma
20 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 20 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
21 >SNORD48 revised 2 extra bases on 5 end x Kt-42.hma 21 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma
22 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 22 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
23 >SNORD48 revised 2 extra bases on 5 end x Kt-42.tth 23 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth
24 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 24 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
25 >SNORD48 revised 2 extra bases on 5 end x Kt-42.dra 25 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra
26 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 26 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
27 >SNORD48 revised 2 extra bases on 5 end x Kt-42.eco 27 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco
28 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 28 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
29 >SNORD48 revised 2 extra bases on 5 end x Kt-46.hma 29 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma
30 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 30 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
31 >SNORD48 revised 2 extra bases on 5 end x Kt-46.tth 31 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth
32 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 32 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
33 >SNORD48 revised 2 extra bases on 5 end x Kt-46.dra 33 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra
34 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 34 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
35 >SNORD48 revised 2 extra bases on 5 end x Kt-46.eco 35 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.eco
36 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 36 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
37 >SNORD48 revised 2 extra bases on 5 end x Kt-58.hma 37 >SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma
38 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 38 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
39 >SNORD48 revised 2 extra bases on 5 end x Kt-U4a.hsa 39 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4a.hsa
40 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 40 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
41 >SNORD48 revised 2 extra bases on 5 end x Kt-U4b.hsa 41 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa
42 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 42 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
43 >SNORD48 revised 2 extra bases on 5 end x Kt-CD-box.CGU 43 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU
44 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 44 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
45 >SNORD48 revised 2 extra bases on 5 end x Kt-CD-box.UGU 45 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU
46 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 46 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
47 >SNORD48 revised 2 extra bases on 5 end x Kt-L30e.sce 47 >SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce
48 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 48 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
49 >SNORD48 revised 2 extra bases on 5 end x Kt-SAM-ribo.tte 49 >SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte
50 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 50 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
51 >SNORD48 revised 2 extra bases on 5 end x Kt-T-box.bsu 51 >SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu
52 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 52 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
53 >SNORD48 revised 2 extra bases on 5 end x Kt-c-di-GMP-II.cac 53 >SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac
54 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 54 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
55 >SNORD48 revised 2 extra bases on 5 end x Kt-G2nA-SAM-riboswitch T. tengcongensi 55 >SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
56 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 56 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC