Mercurial > repos > yhoogstrate > segmentation_fold

diff test-data/SNORD48-revised.scan-for-segments.txt @ 11:487f438da099 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 879dad538d7c2fa8b7e7f3e9460ff88874797d2c
author yhoogstrate
date Fri, 06 May 2016 05:45:36 -0400
parents 21e619c46cb5
children 63156f020cd3
line wrap: on
line diff
--- a/test-data/SNORD48-revised.scan-for-segments.txt	Thu Mar 31 04:20:55 2016 -0400
+++ b/test-data/SNORD48-revised.scan-for-segments.txt	Fri May 06 05:45:36 2016 -0400
@@ -1,74 +1,56 @@
->SNORD48 x Kt-42.dra
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-42.eco
+>SNORD48 revised 2 extra bases on 5 end x Kt-7 G2nA SAM riboswitch H. marismortui
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Loop-E-Motif.bac
+>SNORD48 revised 2 extra bases on 5 end x Kt-7 T. thermophilus
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.UAU
+>SNORD48 revised 2 extra bases on 5 end x Kt-7 E. coli
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.UGU
+>SNORD48 revised 2 extra bases on 5 end x Kt-7 D. radiodurans
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.CAU
+>SNORD48 revised 2 extra bases on 5 end x Kt-11 T. thermophilus
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-42.tth
+>SNORD48 revised 2 extra bases on 5 end x Kt-11.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-7 G2nA SAM riboswitch (H. marismortui)
+>SNORD48 revised 2 extra bases on 5 end x Kt-15.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-15.hma
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-U4b.hsa
+>SNORD48 revised 2 extra bases on 5 end x Kt-23.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.GGU
+>SNORD48 revised 2 extra bases on 5 end x Kt-23.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-7 (E. coli)
+>SNORD48 revised 2 extra bases on 5 end x Kt-38.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-7 (D. radiodurans)
+>SNORD48 revised 2 extra bases on 5 end x Kt-42.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-58.hma
+>SNORD48 revised 2 extra bases on 5 end x Kt-42.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-46.tth
+>SNORD48 revised 2 extra bases on 5 end x Kt-42.dra
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-SAM-ribo.tte
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-23.eco
+>SNORD48 revised 2 extra bases on 5 end x Kt-42.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-38.hma
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-46.dra
+>SNORD48 revised 2 extra bases on 5 end x Kt-46.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.CGU
+>SNORD48 revised 2 extra bases on 5 end x Kt-46.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-T-box.bsu
+>SNORD48 revised 2 extra bases on 5 end x Kt-46.dra
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-23.tth
+>SNORD48 revised 2 extra bases on 5 end x Kt-46.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-46.eco
+>SNORD48 revised 2 extra bases on 5 end x Kt-58.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-c-di-GMP-II.cac
+>SNORD48 revised 2 extra bases on 5 end x Kt-U4a.hsa
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-11 (T. thermophilus)
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.AAU
+>SNORD48 revised 2 extra bases on 5 end x Kt-U4b.hsa
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-L30e.sce
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-7 (T. thermophilus)
+>SNORD48 revised 2 extra bases on 5 end x Kt-CD-box.CGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-42.hma
+>SNORD48 revised 2 extra bases on 5 end x Kt-CD-box.UGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-U4a.hsa
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-G2nA-SAMribo.bsu
+>SNORD48 revised 2 extra bases on 5 end x Kt-L30e.sce
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.GAU
+>SNORD48 revised 2 extra bases on 5 end x Kt-SAM-ribo.tte
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
-((((((.((.((((((((((.....)))).).).)))).((((...))))...)).))))))....	(((((...(((((((...))).....))))).....(((((............)))))))))....	-10.9206504822
->SNORD48 x Kt-11.eco
+>SNORD48 revised 2 extra bases on 5 end x Kt-T-box.bsu
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-46.hma
+>SNORD48 revised 2 extra bases on 5 end x Kt-c-di-GMP-II.cac
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.AGU
+>SNORD48 revised 2 extra bases on 5 end x Kt-G2nA-SAM-riboswitch T. tengcongensi
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
-((((((.((.((((((((((.....)))).).).)))).((((...))))...)).))))))....	((...(((((..((..((((.....)))).))((((.((((((...))))..)).)))))))))))	-1.84962844849