Mercurial > repos > yhoogstrate > samtools_view_header

comparison samtools_view_header.xml @ 2:1a77794c72ed draft

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author yhoogstrate
date Wed, 11 Jun 2014 08:34:22 -0400
parents e233adca8052
children 257f28d66de8
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1:e233adca8052 2:1a77794c72ed
16 16
17 cat stderr.txt 17 cat stderr.txt
18 </command> 18 </command>
19 19
20 <inputs> 20 <inputs>
21 <param format="sam,bam" name="alignment" type="data" label="Alignments in BAM or SAM format" help="The set of aligned reads." /> 21 <param format="sam,bam" name="alignment" type="data" label="Alignment in BAM or SAM format" />
22 </inputs> 22 </inputs>
23 23
24 <outputs> 24 <outputs>
25 <data format="tabular" name="header" label="${tool.name} on ${alignment.name}" /> 25 <data format="tabular" name="header" label="${tool.name} on ${alignment.name}" />
26 </outputs> 26 </outputs>
27 27
28 <help> 28 <help>
29 **samtools view -H ** 29 **samtools_view_header**
30 30
31 **Input formats** 31 **Input formats**
32 32
33 * BAM 33 * BAM
34 * SAM 34 * SAM
35 35
36 **Output format**
37
38 The SAM header as defined in the SAM specification. If the output is empty, there was no header in the alignment
39
40
36 **Installation** 41 **Installation**
42
37 The installation is straight-forward and should go automatically using the Galaxy tool-shed installer. 43 The installation is straight-forward and should go automatically using the Galaxy tool-shed installer.
38 44
39 **License** 45 **License**
40 46
41 * samtools: MIT License 47 * samtools: MIT License