Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_5

changeset 11:d4e473560ae5 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 3814f709ce964e99fe3cf2f979c11f8f3b87bce3-dirty
author yhoogstrate
date Tue, 24 May 2016 03:25:24 -0400
parents 3861f2be5d38
children 1663ade13aed
files tool_dependencies.xml
diffstat 1 files changed, 11 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun May 22 13:18:59 2016 -0400
+++ b/tool_dependencies.xml	Tue May 24 03:25:24 2016 -0400
@@ -17,6 +17,9 @@
     <package name="pysam" version="0.8.2.1">
         <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="htseq" version="0.6.1">
+        <repository changeset_revision="25da74c1ff6d" name="package_htseq_0_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
     
     <package name="setuptools" version="19.0">
         <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -25,7 +28,7 @@
     <package name="segmentation-fold" version="1.6.5">
         <install version="1.0">
             <actions>
-                <action sha256sum="f7d2307f5234c133ad9807c6e5e68312866888ffa993e96ccdbb0f9b7ab5ff62" type="download_by_url">https://github.com/yhoogstrate/segmentation-fold/archive/0ce5f9901e7dcb5d78d750b4df63ab6e03165edb.tar.gz</action>
+                <action sha256sum="f7dfbc70313aa2502dd35692f33bf06ef32c17594a526ea054cf369837aad794" type="download_by_url">https://github.com/yhoogstrate/segmentation-fold/archive/3cce35ab2265caf186c492764afb5a71ae55d80d.tar.gz</action>
                     
                 <action type="set_environment_for_install">
                     <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
@@ -71,24 +74,22 @@
                     <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="setuptools" version="19.0" />
                     </repository>
-                </action>
-                
-                <action type="set_environment_for_install">
+
                      <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="python" version="2.7.10" />
                     </repository>
-                </action>
-                
-                <action type="set_environment_for_install">
+
                     <repository changeset_revision="fe0870696ca7" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="numpy" version="1.9" />
                     </repository>
-                </action>
-                
-                <action type="set_environment_for_install">
+
                     <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="pysam" version="0.8.2.1" />
                     </repository>
+                    
+                    <repository changeset_revision="25da74c1ff6d" name="package_htseq_0_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="htseq" version="0.6.1" />
+                    </repository>
                 </action>
                 
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>