Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_5

changeset 13:ad576c5746d2 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 3814f709ce964e99fe3cf2f979c11f8f3b87bce3-dirty
author yhoogstrate
date Tue, 24 May 2016 07:34:00 -0400
parents 1663ade13aed
children d37a11ac2b85
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue May 24 05:02:11 2016 -0400
+++ b/tool_dependencies.xml	Tue May 24 07:34:00 2016 -0400
@@ -43,10 +43,10 @@
                 </action>
                 
                 <action type="shell_command">
-                    cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
-                    make                                                                    &amp;&amp;
-                    make check                                                              &amp;&amp;
-                    make install
+                    ##cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
+                    ##make                                                                    &amp;&amp;
+                    ##make check                                                              &amp;&amp;
+                    ##make install
                 </action>
                 
                 <action type="set_environment">
@@ -97,6 +97,9 @@
                 <action type="shell_command">
                     export PYTHONPATH="$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python"  &amp;&amp;
                     cd scripts/energy-estimation-utility                                               &amp;&amp;
+                    echo "---------------------------------------------------------------------------" &amp;&amp;
+                    head -n 161 segmentation_fold_utils/XMLFile.py | tail -n 11                        &amp;&amp;
+                    echo "---------------------------------------------------------------------------" &amp;&amp;
                     python setup.py install --home "$INSTALL_DIR" --install-scripts "$INSTALL_DIR/bin"
                 </action>