Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_5

changeset 3:1c7d6b167510 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit fb0bbb26638c0185ef16efa2e0ac3952d671b711-dirty
author yhoogstrate
date Thu, 19 May 2016 03:29:32 -0400
parents bf60a5f98e16
children e3ef4c5b6f19
files tool_dependencies.xml
diffstat 1 files changed, 19 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu May 19 03:07:54 2016 -0400
+++ b/tool_dependencies.xml	Thu May 19 03:29:32 2016 -0400
@@ -11,6 +11,12 @@
     <package name="python" version="2.7.10">
         <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="fe0870696ca7" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="pysam" version="0.8.2.1">
+        <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
     
     <package name="setuptools" version="19.0">
         <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -49,6 +55,19 @@
                         <package name="python" version="2.7.10" />
                     </repository>
                 </action>
+                
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="fe0870696ca7" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.9" />
+                    </repository>
+                </action>
+                
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="pysam" version="0.8.2.1" />
+                    </repository>
+                </action>
+                
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="make_directory">$INSTALL_DIR/lib64/python</action>
                 <action type="shell_command">