Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_5

comparison tool_dependencies.xml @ 16:6952a20fa81a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 6545dbf0edf3a0f9afda8d5a27a646253c8f7115
author yhoogstrate
date Thu, 26 May 2016 06:51:29 -0400
parents f4043c6a367a
children
comparison
equal deleted inserted replaced
15:f4043c6a367a 16:6952a20fa81a
32 32
33 <action type="set_environment_for_install"> 33 <action type="set_environment_for_install">
34 <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 34 <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
35 <package name="boost" version="1.57" /> 35 <package name="boost" version="1.57" />
36 </repository> 36 </repository>
37 </action> 37
38
39 <action type="set_environment_for_install">
40 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 38 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
41 <package name="cmake" version="3.2.3" /> 39 <package name="cmake" version="3.2.3" />
42 </repository> 40 </repository>
43 </action> 41 </action>
44 42
97 <action type="make_directory">$INSTALL_DIR/lib/python</action> 95 <action type="make_directory">$INSTALL_DIR/lib/python</action>
98 <action type="make_directory">$INSTALL_DIR/lib64/python</action> 96 <action type="make_directory">$INSTALL_DIR/lib64/python</action>
99 <action type="shell_command"> 97 <action type="shell_command">
100 export PYTHONPATH="$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python" &amp;&amp; 98 export PYTHONPATH="$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python" &amp;&amp;
101 cd scripts/energy-estimation-utility &amp;&amp; 99 cd scripts/energy-estimation-utility &amp;&amp;
100 echo "---------------------------------------------------------------------------" &amp;&amp;
101 head -n 161 segmentation_fold_utils/XMLFile.py | tail -n 11 &amp;&amp;
102 echo "---------------------------------------------------------------------------" &amp;&amp;
102 python setup.py install --home "$INSTALL_DIR" --install-scripts "$INSTALL_DIR/bin" 103 python setup.py install --home "$INSTALL_DIR" --install-scripts "$INSTALL_DIR/bin"
103 </action> 104 </action>
104 105
105 <action type="set_environment"> 106 <action type="set_environment">
106 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> 107 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>