Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_0

changeset 0:5b89079b53e2 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 4b12ac5efae0802d2614747a639475d8778a68b4-dirty
author yhoogstrate
date Mon, 29 Feb 2016 10:42:35 -0500
parents
children d920d555d40a
files tool_dependencies.xml
diffstat 1 files changed, 47 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Feb 29 10:42:35 2016 -0500
@@ -0,0 +1,47 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="boost" version="1.57">
+        <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="cmake" version="3.2.3">
+        <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="segmentation-fold" version="1.6.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/yhoogstrate/segmentation-fold/archive/v1.6.0.tar.gz</action>
+                    
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="boost" version="1.57" />
+                    </repository>
+                </action>
+                
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="cmake" version="3.2.3" />
+                    </repository>
+                </action>
+                
+                <action type="shell_command">
+                    cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
+                    make                                                                    &amp;&amp;
+                    make install
+                </action>
+                
+                <action type="set_environment">
+                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                     <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installation of segmentation-fold requires:
+             - libboost                     (via toolshed)
+             - CMake                        (via toolshed)
+             - c++11 compiler: g++ or clang
+        </readme>
+    </package>
+</tool_dependency>