Mercurial > repos > yhoogstrate > package_pysam_0_8_2

changeset 0:e6c1f548397a draft default tip

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author yhoogstrate
date Fri, 20 Mar 2015 05:44:16 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 31 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Mar 20 05:44:16 2015 -0400
@@ -0,0 +1,31 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="ez_setup" version="0.9">
+        <repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="pysam" version="0.8.2.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" md5sum="daf63c1665fa601fc942f050f334a627">https://pypi.python.org/packages/source/p/pysam/pysam-0.8.2.1.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="ez_setup" version="0.9" />
+                    </repository>
+                </action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
+            The PYSAM_PATH has to be within the PYTHONPATH to let python automatically load this library.
+        </readme>
+    </package>
+</tool_dependency>
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