Mercurial > repos > yhoogstrate > package_featurecounts_1_4_6
comparison tool_dependencies.xml @ 2:7a484ebcbf48 draft default tip
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| author | yhoogstrate |
|---|---|
| date | Thu, 10 Sep 2015 05:02:00 -0400 |
| parents | 0b6d65d9f103 |
| children |
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| 1:0b6d65d9f103 | 2:7a484ebcbf48 |
|---|---|
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="download_by_url" | 6 <action type="download_by_url" |
| 7 sha256sum="48e0c516684c4771f965a0a3010fbc0ad55fb54cfd8f7090be3f55e7b5c09f36">http://sourceforge.net/projects/subread/files/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz/download</action> | 7 sha256sum="48e0c516684c4771f965a0a3010fbc0ad55fb54cfd8f7090be3f55e7b5c09f36">http://sourceforge.net/projects/subread/files/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz/download</action> |
| 8 <action type="shell_command"><![CDATA[ | 8 <action type="shell_command"><![CDATA[ |
| 9 cd subread-1.4.6-p1-source/src/ && | 9 cd src/ && |
| 10 make -f Makefile.Linux && | 10 make -f Makefile.Linux |
| 11 cd ../../ | |
| 12 ]]></action> | 11 ]]></action> |
| 13 <action type="move_file"> | 12 <action type="move_file"> |
| 14 <source>../subread-1.4.6-p1-source/bin/featureCounts</source> | 13 <source>bin/featureCounts</source> |
| 15 <destination>$INSTALL_DIR/bin/</destination> | 14 <destination>$INSTALL_DIR/bin/</destination> |
| 16 </action> | 15 </action> |
| 17 <action type="set_environment"> | 16 <action type="set_environment"> |
| 18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 19 </action> | 18 </action> |