Mercurial > repos > yhoogstrate > package_crossmap_0_2

changeset 2:84b0390c3868 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 3d756e33e5a551c55cfb91fd95785ce102a8c41f
author yhoogstrate
date Wed, 26 Aug 2015 10:46:57 -0400
parents 1aa7754d9c75
children 8ec1bf2ae8a9
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Aug 13 07:51:36 2015 -0400
+++ b/tool_dependencies.xml	Wed Aug 26 10:46:57 2015 -0400
@@ -26,6 +26,8 @@
                 Therefore install it with a manual shell_command instead
                 of <package></package> inside a pyton_env. -->
                 <action type="shell_command">
+                    sed -i.bak -r 's/numpy.(sum|nan_to_num)+/np.\1(sig_list)/' bin/CrossMap.py &amp;&amp;<!-- bigwig fix, unpatched in 0.2 -->
+                    
                     export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &amp;&amp;
                     
                     python setup.py install --root $INSTALL_DIR