Mercurial > repos > yhoogstrate > package_crossmap_0_2

diff tool_dependencies.xml @ 10:8e3c8401e7db draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb-dirty
author yhoogstrate
date Thu, 27 Aug 2015 05:45:11 -0400
parents a6bb0ac6c402
children 8bff97f30fde
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--- a/tool_dependencies.xml	Thu Aug 27 05:42:54 2015 -0400
+++ b/tool_dependencies.xml	Thu Aug 27 05:45:11 2015 -0400
@@ -45,6 +45,8 @@
                     
                     sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1(sig_list)/" "bin/CrossMap.py" ;
                     
+                    export PYTHONPATH="$CYTHON_PATH/lib:$PYTHONPATH" &&
+                    export PYTHONPATH="$CYTHON_PATH/lib/python:$PYTHONPATH" &&
                     export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &&
                     
                     echo $PYTHONPATH ;