Mercurial > repos > yhoogstrate > package_crossmap_0_2

comparison tool_dependencies.xml @ 10:8e3c8401e7db draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb-dirty
author yhoogstrate
date Thu, 27 Aug 2015 05:45:11 -0400
parents a6bb0ac6c402
children 8bff97f30fde
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9:a6bb0ac6c402 10:8e3c8401e7db
43 <action type="shell_command"> 43 <action type="shell_command">
44 which python ; 44 which python ;
45 45
46 sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1(sig_list)/" "bin/CrossMap.py" ; 46 sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1(sig_list)/" "bin/CrossMap.py" ;
47 47
48 export PYTHONPATH="$CYTHON_PATH/lib:$PYTHONPATH" &amp;&amp;
49 export PYTHONPATH="$CYTHON_PATH/lib/python:$PYTHONPATH" &amp;&amp;
48 export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &amp;&amp; 50 export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &amp;&amp;
49 51
50 echo $PYTHONPATH ; 52 echo $PYTHONPATH ;
51 53
52 python setup.py install --root $INSTALL_DIR 54 python setup.py install --root $INSTALL_DIR