Mercurial > repos > yhoogstrate > package_crossmap_0_2

diff tool_dependencies.xml @ 15:8982f1f9e1a8 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 290b453ad2abdb65322ec2e50889aaf2b03bb095-dirty
author yhoogstrate
date Fri, 28 Aug 2015 07:58:35 -0400
parents d7af71949bef
children 0bd9a115e58a
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Aug 28 07:54:16 2015 -0400
+++ b/tool_dependencies.xml	Fri Aug 28 07:58:35 2015 -0400
@@ -36,18 +36,14 @@
                 $INSTALL_DIR / (python path dir) /
                 -->
                 <action type="shell_command">
-                    sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1/" "bin/CrossMap.py" ;
-                    
-                    python setup.py install --root $INSTALL_DIR &amp;&amp;
-                    mv $INSTALL_DIR$(which python)/bin $INSTALL_DIR/bin &amp;&amp;
-                    mv $INSTALL_DIR$(which python)/lib $INSTALL_DIR/lib ;
+
                     
                     echo "a" ; 
+                    echo "b" &amp;&amp;
+                    echo "c" ;
                     
                     <!--
-                    export PYTHONPATH="$CYTHON_PATH/lib:$PYTHONPATH" &amp;&amp;
-                    export PYTHONPATH="$CYTHON_PATH/lib/python:$PYTHONPATH" &amp;&amp;
-                    export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &amp;&amp;
+                    comment
                     -->
                     
                     echo "b" ;