comparison tool_dependencies.xml @ 15:8982f1f9e1a8 draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 290b453ad2abdb65322ec2e50889aaf2b03bb095-dirty

14:d7af71949bef

                
                Using - - root places the installation in:
                $INSTALL_DIR / (python path dir) /
                -->
                <action type="shell_command">
                    sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1/" "bin/CrossMap.py" ;
                    
                    python setup.py install --root $INSTALL_DIR &amp;&amp;
                    mv $INSTALL_DIR$(which python)/bin $INSTALL_DIR/bin &amp;&amp;
                    mv $INSTALL_DIR$(which python)/lib $INSTALL_DIR/lib ;
                    
                    echo "a" ; 
                    
                    <!--
                    export PYTHONPATH="$CYTHON_PATH/lib:$PYTHONPATH" &amp;&amp;
                    export PYTHONPATH="$CYTHON_PATH/lib/python:$PYTHONPATH" &amp;&amp;
                    export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &amp;&amp;
                    -->
                    
                    echo "b" ;
                    
                </action>

15:8982f1f9e1a8

                
                Using - - root places the installation in:
                $INSTALL_DIR / (python path dir) /
                -->
                <action type="shell_command">

                    
                    echo "a" ; 
                    echo "b" &amp;&amp;
                    echo "c" ;
                    
                    <!--
                    comment
                    -->
                    
                    echo "b" ;
                    
                </action>