Mercurial > repos > yhoogstrate > package_crossmap_0_2

diff tool_dependencies.xml @ 18:40758e611549 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 290b453ad2abdb65322ec2e50889aaf2b03bb095-dirty
author yhoogstrate
date Fri, 28 Aug 2015 08:58:29 -0400
parents 823f0b1beccd
children f66d679d8f5d
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line diff
--- a/tool_dependencies.xml	Fri Aug 28 08:49:15 2015 -0400
+++ b/tool_dependencies.xml	Fri Aug 28 08:58:29 2015 -0400
@@ -39,8 +39,10 @@
                     sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1/" "bin/CrossMap.py" ;
                     
                     python setup.py install --root $INSTALL_DIR &&
-                    mv $INSTALL_DIR$(which python)/bin $INSTALL_DIR/bin &&
-                    mv $INSTALL_DIR$(which python)/lib $INSTALL_DIR/lib
+                    export SUB_DIR=$(dirname $(which python)) &&
+                    echo $SUB_DIR &&
+                    mv $INSTALL_DIR$SUB_DIR/bin $INSTALL_DIR/bin &&
+                    mv $INSTALL_DIR$SUB_DIR/lib $INSTALL_DIR/lib
                 </action>
                 
                 <action type="set_environment">