Mercurial > repos > yhoogstrate > package_crossmap_0_2

comparison tool_dependencies.xml @ 18:40758e611549 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 290b453ad2abdb65322ec2e50889aaf2b03bb095-dirty
author yhoogstrate
date Fri, 28 Aug 2015 08:58:29 -0400
parents 823f0b1beccd
children f66d679d8f5d
comparison
equal deleted inserted replaced
17:823f0b1beccd 18:40758e611549
37 --> 37 -->
38 <action type="shell_command"> 38 <action type="shell_command">
39 sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1/" "bin/CrossMap.py" ; 39 sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1/" "bin/CrossMap.py" ;
40 40
41 python setup.py install --root $INSTALL_DIR &amp;&amp; 41 python setup.py install --root $INSTALL_DIR &amp;&amp;
42 mv $INSTALL_DIR$(which python)/bin $INSTALL_DIR/bin &amp;&amp; 42 export SUB_DIR=$(dirname $(which python)) &amp;&amp;
43 mv $INSTALL_DIR$(which python)/lib $INSTALL_DIR/lib 43 echo $SUB_DIR &amp;&amp;
44 mv $INSTALL_DIR$SUB_DIR/bin $INSTALL_DIR/bin &amp;&amp;
45 mv $INSTALL_DIR$SUB_DIR/lib $INSTALL_DIR/lib
44 </action> 46 </action>
45 47
46 <action type="set_environment"> 48 <action type="set_environment">
47 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 49 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
48 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR"/lib/python"</environment_variable> 50 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR"/lib/python"</environment_variable>