Mercurial > repos > yhoogstrate > package_crossmap_0_1_8

changeset 3:99d7003b0fe1 draft

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Uploaded
author yhoogstrate
date Wed, 22 Jul 2015 06:08:11 -0400
parents 6dc34120af04
children 68786895ca37
files tool_dependencies.xml
diffstat 1 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jul 22 06:03:05 2015 -0400
+++ b/tool_dependencies.xml	Wed Jul 22 06:08:11 2015 -0400
@@ -14,17 +14,18 @@
                 <action type="setup_python_environment">
                     <repository changeset_revision="507f3ab4e38d" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="numpy" version="1.9" />
-                        <action type="shell_command">echo "test1" &gt; /tmp/test1.txt ; export $PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg":$PYTHONPATH</action>
                     </repository>
-                    
-                    <action type="shell_command">echo "test2" &gt; /tmp/test2.txt ; export $PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg":$PYTHONPATH</action>
-                    
+                </action>
+                
+                <action type="shell_command">echo "test3" &gt; /tmp/test3.txt ; export $PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH"</action>
+                
+                <action type="setup_python_environment">
                     <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="cython" version="0.20.1" />
                     </repository>
-                    <!-- /usr/local/src/galaxy/tool-dependencies/cython/0.20.1/iuc/package_cython_0_20_1/749f11b9358a/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg -->
                     <package>http://sourceforge.net/projects/crossmap/files/CrossMap-0.1.8.tar.gz</package>
                 </action>
+                
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/usr/local/lib/python2.7/site-packages</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/usr/local/bin</environment_variable>