Mercurial > repos > yhoogstrate > fuma
changeset 2:76293f7745ff draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Sun, 29 Mar 2015 05:28:17 -0400 |
| parents | 56b2b5084c85 |
| children | f06461883f7b |
| files | fuma.xml test-data/chimerascan.txt test-data/defuse.txt test-data/edgren_tp.txt test-data/fusion-map.txt test-data/output.txt test-data/refseq_genes_hg19.bed |
| diffstat | 7 files changed, 63727 insertions(+), 4 deletions(-) [+] |
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--- a/fuma.xml Sat Mar 21 03:01:14 2015 -0400 +++ b/fuma.xml Sun Mar 29 05:28:17 2015 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="fuma" name="FuMa" version="2.6.6.a"> +<tool id="fuma" name="FuMa" version="2.6.6.b"> <description>FuMa (FusionMatcher) matches detected fusion genes based on gene name subset matching (designed in particular for RNA-Seq).</description> <requirements> @@ -36,13 +36,13 @@ $samples_str -l $links_str - -f 'list' + -f $output_format -o $fuma_overview </command> <inputs> <repeat name="datasets" title="FusionGene Datasets" min="2"> - <param name="sample" type="data" format="txt, tabular" label="Dataset ()" /> + <param name="sample" type="data" format="txt,tabular" label="Dataset (RNA-Seq fusion gene detection experiment)" /> <param name="format" type="select" label="Format of dataset"> <option value="chimerascan">ChimeraScan</option> <option value="defuse">DeFuse</option> @@ -56,14 +56,48 @@ <option value="oncofuse">Oncofuse</option> <option value="trinitygmap">GMAP (As step after Trinity)</option> </param> - <param name="gene_annotation" type="data" format="bed" label="Corresponding gene-name annotation file (BED format)" help="Make use of persistent gene names if different gene names are being used." /> + <param name="gene_annotation" type="data" format="bed" label="Corresponding gene-name annotation file (BED format)" help="Make use of persistent gene annotations! Gene annotations should only be different if different reference genome builds were used." /> </repeat> + + <param name="output_format" type="select" label="Output format"> + <option value="list" selected="true">List</option> + <option value="summary">Count summary</option> + </param> </inputs> <outputs> <data format="tabular" name="fuma_overview" label="${tool.name} on ${', '.join([ str(d['sample'].hid)+': '+d['sample'].name for d in $datasets ])}" /> </outputs> + <tests> + <test> + <!-- <repeat name="datasets"> --> + <param name="datasets_0|sample" value="chimerascan.txt" ftype="tabular" /> + <param name="datasets_0|format" value="chimerascan" /> + <param name="datasets_0|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" /> + <!-- </repeat> --> + <!-- <repeat name="datasets"> --> + <param name="datasets_1|sample" value="defuse.txt" ftype="tabular" /> + <param name="datasets_1|format" value="defuse" /> + <param name="datasets_1|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" /> + <!-- </repeat> --> + <!-- <repeat name="datasets"> --> + <param name="datasets_2|sample" value="fusion-map.txt" ftype="tabular" /> + <param name="datasets_2|format" value="fusionmap" /> + <param name="datasets_2|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" /> + <!-- </repeat> --> + <!-- <repeat name="datasets"> --> + <param name="datasets_3|sample" value="edgren_tp.txt" ftype="tabular" /> + <param name="datasets_3|format" value="fusionmap" /> + <param name="datasets_3|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" /> + <!-- </repeat> --> + + <param name="output_format" value="summary" /> + + <output name="fuma_overview" file="output.txt" /> + </test> + </tests> + <help> </help> </tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/chimerascan.txt Sun Mar 29 05:28:17 2015 -0400 @@ -0,0 +1,13347 @@ +#chrom5p start5p end5p chrom3p start3p end3p chimera_cluster_id score strand5p strand3p +chr8 125551265 125551328 chr17 38060847 38066176 CLUSTER8432 278 - - +chr20 49411466 49411709 chr17 59445687 59470198 CLUSTER10677 196 + + +chr17 35479452 35562785 chr17 37366788 37374425 CLUSTER11520 80 - - +chr20 56964174 56964572 chr17 37921198 37934019 CLUSTER11559 43 + - +chr17 57970442 57970685 chr17 47007458 47018423 CLUSTER1046 43 + - +chr19 571324 580781 chr19 13135834 13209609 CLUSTER2159 40 + + +chr17 76778283 76778375 chr8 117657054 117768035 CLUSTER3062 33 - - +chr17 48943418 48943714 chr17 35874899 35880750 CLUSTER12009 30 - - +chr20 45852969 45905538 chr20 34078462 34099802 CLUSTER6163 28 - + +chrM 15503 15887 chrM 235 367 CLUSTER3998 28 - - +chr4 76649459 76649794 chr4 76567952 76587232 CLUSTER495 21 - - +chr20 47538274 47538546 chr20 46286149 46365685 CLUSTER6259 21 + - 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N +33625 + - 8 19 22457324 24184153 + + N +33588 + - 20 19 56886178 17256207 + - N +32412 - - 19 X 24184163 39646816 + + N +10120 - - 17 3 37076121 128532430 - - N +29020 + + 20 20 47688989 47956856 + - N +13541 + - Y 1 16702470 154644560 + + N +7094 + - 2 2 232577596 232325382 + + N +32413 - + 19 X 24184164 32777977 + - N +20882 - - 16 4 31195715 190988795 - - N +15470 - + 16 1 18812865 569362 + - N +16528 + - 1 9 568268 131456198 - - N +29634 - + 8 X 70602595 108297354 + - N +14629 - + 17 1 37006713 569766 + - N +23039 - - MT MT 5317 14450 - + N +19919 + - 16 2 33963087 133013094 - + N +25510 + - 12 12 52629150 53295003 + + N +24829 + - 12 X 53293813 147930716 - - N +15662 - - 1 6 566884 39926408 - + N +31683 - - 10 12 50759057 52642535 + - N +31199 + + 10 17 14948885 48771491 - - N +14722 + - 1 17 568326 39684175 - + N +34237 + - X 5 108297521 134263478 - - N +27301 - - 14 9 23397781 5684145 + - N +14191 - - 2 1 232326351 565794 + - N +31762 + - 10 14 21811207 43769558 - - N +16184 - + 1 3 567161 161147357 - + N +23066 - - MT MT 8463 14449 - + N +1862 - + 11 3 67034156 129324109 - - N +32122 - - 10 19 79793642 49994735 - - N +7065 + - 2 2 10269281 10281981 + - Y +30709 - - 4 5 41218459 138941156 + - N +23004 + - MT MT 5491 10766 + - N +17275 - - 8 1 70602445 91852915 + + N +18209 - - 1 5 567933 122971859 - - N +23100 + - MT MT 13933 8922 + - N +12179 + - 17 4 48940637 190988698 - - N +494 - + 11 2 65267106 88124621 - - N +31973 + - 10 10 81436235 81451814 + + N +16795 - + 12 1 2906442 568267 - - N +16578 - + 9 1 131456312 569028 - - N +31768 + + 14 10 90871914 97074766 + - N +14624 - + 17 1 16284440 569116 - - N +20356 + - 16 16 83823923 83837043 + - Y +9710 - + 17 17 30265023 29036827 - + N +18265 + + 7 18 134222346 66123551 + - N +9642 + - 17 17 37607291 53218671 - - N +2809 + - 11 8 61734791 125184439 - + N +15043 + - 1 1 204336927 204243937 - + Y +32383 - - 19 X 24184162 40794440 + + N +6566 - - 9 2 79186659 159440688 - - N +33785 + + 19 19 1478772 1461822 - + Y +16019 - - 1 X 91853333 108297686 + + N +7766 - + 4 2 108538376 217537060 + - N +29002 + - 20 20 47364346 34215335 - + N +34832 + + Y 5 10036487 174541791 - - N +19108 + - 16 13 89629473 61982650 + + N +23032 + - MT MT 366 5058 + - N +31167 + + 17 10 33478209 98510608 + + N +23091 + - MT MT 13459 8483 + - N +16760 + + 12 1 34372612 91852716 - - N +17609 - + 4 1 76807187 91852878 - - N +23351 - - 9 9 131873910 131870826 - + Y +23125 + - MT MT 11705 8626 + - N +17071 - - 15 1 72501076 567095 + - N +10088 - - 17 3 36882643 128532429 - - N +25925 - - 12 8 124069098 145560583 - + N +29283 + - 20 20 62500794 62559688 + - Y +92 + + 11 11 68228292 70803331 + - N +9332 - - 17 17 37360418 33478115 - - N +14625 - - 17 1 16284409 567002 - - N +23337 - - 9 9 139372137 139377391 + - Y +9567 + - 17 17 62557620 66121529 - - N +26181 - - 12 19 53291325 24184153 + + N +12862 + - 1 11 569399 77597766 - + N +15715 - - 6 1 90431273 173833443 + + N +31857 + + 8 10 62492424 69423147 - - N +23099 + - MT MT 14059 8630 + - N +14136 - + 2 1 232577576 568792 - - N +17576 + + 1 4 55331013 19415496 - - N +25490 - - 12 12 32717072 32552894 - + N +33688 - + 19 22 24184151 50437875 + - N +12925 - + 11 1 65826808 568268 - - N +33281 - + 19 2 36632031 110552206 - + N +16824 - - 12 1 49521951 565798 + - N +18584 - + 20 18 2451398 56127640 + - N +34906 - + 5 5 17354541 134261120 + + N +27405 + - 14 14 23777362 23791029 + - Y +14583 - - 17 1 34171314 565830 - - N +34937 - + 5 5 154135751 154062594 - + N +25613 + + 12 12 80648908 86828879 + - N +14178 - + 2 1 217363565 568307 - - N +29139 + - 20 20 19780391 19870210 + - N +22733 + - 5 3 134263530 141762792 + + N +23129 + - MT MT 11706 3580 + - N +23122 + - MT MT 11255 7718 + - N +2312 - - 9 11 23528709 65271794 - - N +16015 - - 1 X 91853147 108297892 + + N +32411 - - X 19 1505482 47278338 + + N +23049 + - MT MT 367 15266 + - N +14242 + - 1 2 569569 133038720 - + N +7567 + - 2 8 232577165 11700701 + + N +23043 - - MT MT 14364 7718 + - N +12538 - + 22 X 29191359 108297523 + - N +23146 - - MT MT 10929 14450 - + N +30548 + - 4 7 177249719 5567242 + + N +14710 - + 17 1 33478117 91852849 - - N +15211 + - 1 1 161123716 161102570 - + N +27138 - - 3 14 31699678 50053545 + + N +12917 - + 11 1 62339069 568488 + - N +30185 + - 4 4 779682 776634 - + Y +18722 - - 18 5 45379834 81572329 + + N +13607 - - 2 1 33141546 108113634 - + N +3168 - + 11 5 2019011 134259999 + + N +12433 - - 5 17 34955886 29119901 - + N +23330 - - 9 9 139372139 139378921 + - Y +14232 + - 1 2 569011 207284336 - + N +31817 - + 20 10 32664993 21811145 - - N +17006 + + 1 14 151738242 50329313 + - N +16784 + - 1 12 91852672 127650989 - + N +3290 - + 11 5 2019030 134263539 + + N +9360 + + 17 17 37359262 56769000 + - N +12747 - + 11 1 10830376 569766 + - N +10164 - - 17 X 33478114 108297713 - + N +23851 - + 12 2 54677629 88124624 - - N +33050 - + 19 7 9361819 97599083 - - N +12227 - + 19 17 24184163 60142706 + - N +12282 + - 19 17 11945083 37868701 + - N +8398 - + 2 5 232576633 134260383 - + N +14515 - + 17 1 37828494 569305 + - N +9626 + - 17 17 57232492 34863351 - + N +15768 + + 1 X 568364 108297446 - - N +23135 + - MT MT 6472 10858 + - N +9691 + + 17 17 37360941 33478228 + + N +25777 - - 20 12 2451398 3560214 + - N +33699 - + 4 19 38629661 33185000 + + N +14138 - - 2 1 232577176 565851 - - N +23083 + - MT MT 13987 6324 + - N +16016 - - 1 X 91853050 108297687 + + N +12950 - + 11 1 2017954 568203 + - N +15652 - - 6 1 75950980 566931 + - N +15640 - + 1 6 224548265 937525 - - N +33433 - - 2 19 204055493 24184153 - + N +23003 + - MT MT 5490 14115 + - N +33615 + - 19 8 1478773 145981626 - + N +4672 + + 21 2 9827191 88124672 - - N +33263 + - 19 2 24184077 230045634 - + N +23075 - - MT MT 7768 14653 - + N +8397 - + 2 5 232576639 134263192 - + N +33953 - + 19 5 24184164 139666182 + - N +18059 + - 1 5 569446 177482956 - - N +32486 - + 19 3 14606850 129324128 + - N +2368 - + 12 11 76443552 125938478 + + N +1042 - + 11 17 810235 33478232 - + N +7322 - - 20 2 48807862 133038722 - + N +17868 - + 19 1 13054352 568203 - - N +30812 - - 11 10 2018875 69423263 + + N +34942 + - 5 5 134260436 177482849 + - N +14718 + + 1 17 568222 33478228 - + N +23748 - - 2 12 203500040 124069216 - - N
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/edgren_tp.txt Sun Mar 29 05:28:17 2015 -0400 @@ -0,0 +1,28 @@ +FusionID all.UniqueCuttingPositionCount all.SeedCount all.RescuedCount Strand Chromosome1 Position1 Chromosome2 Position2 KnownGene1 KnownTranscript1 KnownExonNumber1 KnownTranscriptStrand1 KnownGene2 KnownTranscript2 KnownExonNumber2 KnownTranscriptStrand2 FusionJunctionSequence SplicePattern FusionGene FrameShift +Edgren_ACACA_STAC2 -- chr17 35604416 chr17 37374457 +Edgren_ANKHD1_PCDH1 +- chr5 139855281 chr5 141245875 +Edgren_BSG_NFIX ++ chr19 577395 chr19 13158016 +Edgren_CCDC85C_SETD3 -- chr14 100023983 chr14 99905650 +Edgren_CPNE1_PI3 -+ chr20 34233416 chr20 43804351 +Edgren_CSE1L_ENSG00000236127 ++ chr20 47688169 chr20 47951036 +Edgren_CYTH1_EIF3H -- chr17 76724255 chr8 117716767 +Edgren_DHX35_ITCH ++ chr20 37629654 chr20 33025120 +Edgren_DIDO1_KIAA0406 -- chr20 61539197 chr20 36636628 +Edgren_GLB1_CMTM7 -+ chr3 33088411 chr3 32478861 +Edgren_LAMP1_MCF2L2 +- chr13 113964772 chr3 183021199 +Edgren_NFS1_PREX1 -- chr20 34271629 chr20 47342605 +Edgren_NOTCH1_NUP214 -+ chr9 139414605 chr9 134055503 +Edgren_PPP1R12A_SEPT10 -- chr12 80248292 chr2 110336171 +Edgren_RAB22A_MYO9B ++ chr20 56913658 chr19 17255969 +Edgren_RARA_PKIA ++ chr17 38489269 chr8 79472938 +Edgren_RPS6KB1_SNF8 +- chr17 57999186 chr17 47014579 +Edgren_SKA2_MYO19 -- chr17 57209971 chr17 34875381 +Edgren_STARD3_DOK5 ++ chr17 37806528 chr20 53179923 +Edgren_SUMF1_LRRFIP2 -- chr3 4125732 chr3 37159649 +Edgren_TATDN1_GSDMB -- chr8 125526213 chr17 38068478 +Edgren_VAPB_IKZF3 +- chr20 56995168 chr17 37970820 +Edgren_WDR67_ZNF704 +- chr8 124096521 chr8 81733797 +Edgren_ZMYND8_CEP250 -+ chr20 45911713 chr20 34071395 +Edgren_BCAS4_BCAS3 ++ chr20 49452573 chr17 59112507 +Edgren_ARFGEF2_SULF2 +- chr20 47595829 chr20 46350226 +Edgren_RPS6KB1_TMEM49 ++ chr17 57999186 chr17 57851408
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fusion-map.txt Sun Mar 29 05:28:17 2015 -0400 @@ -0,0 +1,70 @@ +FusionID all.UniqueCuttingPositionCount all.SeedCount all.RescuedCount Strand Chromosome1 Position1 Chromosome2 Position2 KnownGene1 KnownTranscript1 KnownExonNumber1 KnownTranscriptStrand1 KnownGene2 KnownTranscript2 KnownExonNumber2 KnownTranscriptStrand2 FusionJunctionSequence SplicePattern FusionGene FrameShift +FUS_26799002_2222102817(--) -- 1 26799003 12 56527458 +FUS_27652879_2794310094(-+) -+ 1 27652880 17 79477135 +FUS_27677421_1106763499(--) -- 1 27677422 6 44221420 +FUS_52818775_491865792(++) ++ 1 52818776 2 242615169 +FUS_109756747_2844503161(++) ++ 1 109756748 18 48474938 +FUS_162336993_162351680(++) ++ 1 162336994 1 162351681 +FUS_204162041_204183009(++) ++ 1 204162042 1 204183010 +FUS_260933576_260947203(++) ++ 2 11682953 2 11696580 +FUS_317729880_2671195661(--) -- 2 68479257 16 46717518 +FUS_431341885_488240973(++) ++ 2 182091262 2 238990350 +FUS_468401284_468407812(++) ++ 2 219150661 2 219157189 +FUS_481827274_1095808311(-+) -+ 2 232576651 6 33266232 +FUS_535356398_535379077(++) ++ 3 42906351 3 42929030 +FUS_564945819_2208207316(++) ++ 3 72495772 12 42631957 +FUS_622049449_622062384(++) ++ 3 129599402 3 129612337 +FUS_641333884_641344084(++) ++ 3 148883837 3 148894037 +FUS_642753372_2640297172(++) ++ 3 150303325 16 15819029 +FUS_650628845_650704928(++) ++ 3 158178798 3 158254881 +FUS_688959544_1831692166(-+) -+ 3 196509497 X 151302279 +FUS_690560141_1289758805(-+) -+ 4 87630 7 56101654 +FUS_844223288_2907008396(--) -- 4 153750777 19 32902925 +FUS_950027061_1496638003(+-) +- 5 68400246 8 103842164 +FUS_1021452375_1022860816(+-) +- 5 139825560 5 141234001 +FUS_1093233534_2218149952(-+) -+ 6 30691455 12 52574593 +FUS_1096426187_3038889284(--) -- 6 33884108 21 42629253 +FUS_1136770263_2286212600(++) ++ 6 74228184 12 120637241 +FUS_1136770312_2883379228(-+) -+ 6 74228233 19 9273757 +FUS_1136770987_1980946407(+-) +- 6 74228908 10 85912360 +FUS_1233435659_2723113969(--) -- 6 170893580 17 8281010 +FUS_1309258884_2298001199(++) ++ 7 75601733 12 132425840 +FUS_1325089044_1999508485(+-) +- 7 91431893 10 104474438 +FUS_1472280885_2753298497(--) -- 8 79485046 17 38465538 +FUS_1518347105_2752895197(--) -- 8 125551266 17 38062238 +FUS_1518347105_2752895483(--) -- 8 125551266 17 38062524 +FUS_1518347105_2752896199(--) -- 8 125551266 17 38063240 +FUS_1518347105_2752899136(--) -- 8 125551266 17 38066177 +FUS_1536899619_2586923912(++) ++ 8 144103780 15 64977161 +FUS_1625744006_2750144109(-+) -+ 9 86584135 17 35311150 +FUS_1654638612_1662879517(--) -- 9 115478741 9 123719646 +FUS_1669121216_1669132845(++) ++ 9 129961345 9 129972974 +FUS_1670521420_3062528544(++) ++ 9 131361549 22 18138593 +FUS_1799397243_2485431458(+-) +- X 119007356 14 70834275 +FUS_1900761185_1900785540(++) ++ 10 5727138 10 5751493 +FUS_1908751091_1908769529(++) ++ 10 13717044 10 13735482 +FUS_2018880080_2591692014(--) -- 10 123846033 15 69745263 +FUS_2041405408_2909026952(-+) -+ 11 10836577 19 34921481 +FUS_2088954897_2955778536(-+) -+ 11 58386066 20 22544041 +FUS_2123194535_2562850433(++) ++ 11 92625704 15 40903682 +FUS_2172555288_2751715570(--) -- 12 6979929 17 36882611 +FUS_2217352725_2217359993(++) ++ 12 51777366 12 51784634 +FUS_2220354100_2220360378(++) ++ 12 54778741 12 54785019 +FUS_2345398656_2640249892(-+) -+ 13 45971393 16 15771749 +FUS_2412983948_2413096340(++) ++ 13 113556685 13 113669077 +FUS_2439284820_2439298041(++) ++ 14 24687637 14 24700858 +FUS_2451742910_2913912193(-+) -+ 14 37145727 19 39806722 +FUS_2489891478_2508003573(+-) +- 14 75294295 14 93406390 +FUS_2749696310_2772065451(++) ++ 17 34863351 17 57232492 +FUS_2749696722_2772065451(++) ++ 17 34863763 17 57232492 +FUS_2750312412_2752207385(--) -- 17 35479453 17 37374426 +FUS_2752428377_2763381348(-+) -+ 17 37595418 17 48548389 +FUS_2758316408_2758339948(++) ++ 17 43483449 17 43506989 +FUS_2774302297_2774962857(-+) -+ 17 59469338 17 60129898 +FUS_2780655412_2781079288(++) ++ 17 65822453 17 66246329 +FUS_2788733755_2966381512(-+) -+ 17 73900796 20 33147017 +FUS_2792979986_2792985266(++) ++ 17 78147027 17 78152307 +FUS_2893652499_2893681620(++) ++ 19 19547028 19 19576149 +FUS_2914960146_2914976931(++) ++ 19 40854675 19 40871460 +FUS_2979600181_2980773042(+-) +- 20 46365686 20 47538547 +FUS_3006176578_3036925768(++) ++ 21 9916547 21 40665737
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.txt Sun Mar 29 05:28:17 2015 -0400 @@ -0,0 +1,23 @@ + chimerascan.txt (10914) defuse.txt (258) fusion-map.txt (58) edgren_tp.txt (25) +chimerascan.txt (10914) 32/10914 (0.29%) : 32/258 (12.4%) 17/10914 (0.16%) : 17/58 (29.31%) 18/10914 (0.16%) : 18/25 (72.0%) +defuse.txt (258) 32/258 (12.4%) : 32/10914 (0.29%) 9/258 (3.49%) : 9/58 (15.52%) 17/258 (6.59%) : 17/25 (68.0%) +fusion-map.txt (58) 17/58 (29.31%) : 17/10914 (0.16%) 9/58 (15.52%) : 9/258 (3.49%) 6/58 (10.34%) : 6/25 (24.0%) +edgren_tp.txt (25) 18/25 (72.0%) : 18/10914 (0.16%) 17/25 (68.0%) : 17/258 (6.59%) 6/25 (24.0%) : 6/58 (10.34%) + + + chimerascan.txt (10914) defuse.txt (258) fusion-map.txt (58) edgren_tp.txt (25) +chimerascan.txt & defuse.txt (32) 8/32 (25.0%) : 8/58 (13.79%) 15/32 (46.88%) : 15/25 (60.0%) +chimerascan.txt & fusion-map.txt (17) 8/17 (47.06%) : 8/258 (3.1%) 5/17 (29.41%) : 5/25 (20.0%) +chimerascan.txt & edgren_tp.txt (18) 15/18 (83.33%) : 15/258 (5.81%) 5/18 (27.78%) : 5/58 (8.62%) +defuse.txt & fusion-map.txt (9) 8/9 (88.89%) : 8/10914 (0.07%) 6/9 (66.67%) : 6/25 (24.0%) +defuse.txt & edgren_tp.txt (17) 15/17 (88.24%) : 15/10914 (0.14%) 6/17 (35.29%) : 6/58 (10.34%) +fusion-map.txt & edgren_tp.txt (6) 5/6 (83.33%) : 5/10914 (0.05%) 6/6 (100.0%) : 6/258 (2.33%) + + + chimerascan.txt (10914) defuse.txt (258) fusion-map.txt (58) edgren_tp.txt (25) +chimerascan.txt & defuse.txt & fusion-map.txt (8) 5/8 (62.5%) : 5/25 (20.0%) +chimerascan.txt & defuse.txt & edgren_tp.txt (15) 5/15 (33.33%) : 5/58 (8.62%) +chimerascan.txt & fusion-map.txt & edgren_tp.txt (5) 5/5 (100.0%) : 5/258 (1.94%) +defuse.txt & fusion-map.txt & edgren_tp.txt (6) 5/6 (83.33%) : 5/10914 (0.05%) + +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/refseq_genes_hg19.bed Sun Mar 29 05:28:17 2015 -0400 @@ -0,0 +1,49305 @@ +chr1 66999824 67210768 NM_032291 +chr1 48998526 50489626 NM_032785 +chr1 16767166 16786584 NM_001145277 +chr1 16767166 16786584 NM_001145278 +chr1 16767166 16786584 NM_018090 +chr1 25071759 25170815 NM_013943 +chr1 33546713 33585995 NM_052998 +chr1 8384389 8404227 NM_001080397 +chr1 92145899 92371559 NM_001195684 +chr1 92145899 92351836 NM_001195683 +chr1 92145899 92351836 NM_003243 +chr1 100652477 100715409 NM_001918 +chr1 92145899 92351836 NR_036634 +chr1 175913961 176176380 NM_001286644 +chr1 175913961 176176380 NM_022457 +chr1 184356149 184598155 NM_030806 +chr1 150980972 151008189 NM_021222 +chr1 175913961 176176380 NM_001001740 +chr1 226418849 226497204 NM_001270409 +chr1 226418849 226497204 NM_173083 +chr1 226418849 226497449 NM_001270410 +chr1 2985741 3355185 NM_199454 +chr1 2985741 3355185 NM_022114 +chr1 2005424 2116834 NM_001242874 +chr1 6845383 7829766 NM_015215 +chr1 6281252 6296044 NM_012405 +chr1 1017197 1051736 NM_017891 +chr1 2036154 2116834 NM_001033582 +chr1 2005085 2116834 NM_001033581 +chr1 1981908 2116834 NM_002744 +chr1 22004791 22109688 NM_032236 +chr1 20959947 20978004 NM_032409 +chr1 23037330 23241823 NM_017449 +chr1 23037330 23241823 NM_004442 +chr1 20969149 20978686 NR_046507 +chr1 29213602 29446558 NM_001166005 +chr1 32479294 32509482 NM_001271878 +chr1 29213602 29446558 NM_004437 +chr1 27248212 27273362 NM_006600 +chr1 28296854 28415148 NM_001990 +chr1 29241087 29391733 NM_001166006 +chr1 28296854 28415148 NM_001282561 +chr1 29213602 29446558 NM_001166007 +chr1 31404352 31538564 NM_014676 +chr1 28296854 28415148 NM_001282562 +chr1 32479294 32509482 NM_006559 +chr1 26210676 26232993 NM_001145454 +chr1 28303783 28415148 NM_001282560 +chr1 29213602 29446558 NM_203343 +chr1 32479294 32526460 NR_073499 +chr1 32479294 32509482 NR_073498 +chr1 29213602 29446558 NM_203342 +chr1 31404352 31538564 NM_001020658 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212859758 212873327 NM_018664 +chr1 215796235 216596738 NM_206933 +chr1 216676587 217113017 NM_001243511 +chr1 216676587 217113017 NM_001243510 +chr1 216676587 217113015 NM_001243513 +chr1 216676587 217113015 NM_001243512 +chr1 210501595 210849638 NM_001170564 +chr1 210502639 210849638 NM_001170580 +chr1 210502249 210849638 NM_001170587 +chr1 210502249 210849638 NM_018194 +chr1 210502249 210849638 NM_001170588 +chr1 216676587 217250312 NM_001243507 +chr1 216676587 217250312 NM_001243509 +chr1 216676587 217262987 NM_206595 +chr1 216676587 217262987 NM_206594 +chr1 225117355 225586996 NM_001373 +chr1 220046618 220292777 NR_002753 +chr1 220141941 220220000 NM_004446 +chr1 231664398 231954990 NR_028395 +chr1 231664398 231954990 NR_028394 +chr1 231664398 231838307 NR_028399 +chr1 229577043 229644088 NM_018230 +chr1 231664398 231954990 NR_028397 +chr1 231664398 231954990 NR_028396 +chr1 231664398 232177019 NR_028393 +chr1 231664398 231886365 NR_028400 +chr1 231727037 231747836 NR_034037 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1655775 NM_033493 +chr1 1309109 1310818 NM_017900 +chr1 1177825 1182102 NM_001014980 +chr1 1682670 1711508 NM_001198994 +chr1 2160133 2241652 NM_003036 +chr1 2487804 2495267 NM_003820 +chr1 2572806 2706230 NM_001242672 +chr1 3773830 3801993 NM_001282669 +chr1 3404505 3528059 NM_001409 +chr1 3668964 3688209 NM_152492 +chr1 3773830 3801993 NM_004402 +chr1 3773830 3801993 NR_104222 +chr1 4715104 4843851 NM_018836 +chr1 4715104 4837854 NM_001042478 +chr1 6106173 6161253 NM_001199863 +chr1 6052357 6161253 NM_001199861 +chr1 6105980 6161253 NM_001199862 +chr1 6086072 6161253 NM_172130 +chr1 6086072 6161253 NM_003636 +chr1 6094347 6161253 NM_001199860 +chr1 5922869 6052533 NM_015102 +chr1 6324331 6445883 NM_181864 +chr1 6526151 6557484 NM_001042663 +chr1 6845383 6948261 NR_038934 +chr1 6526151 6557156 NM_001265592 +chr1 6845383 6948261 NM_001242701 +chr1 6324331 6453826 NM_007274 +chr1 6526151 6580121 NM_198681 +chr1 7975930 8003225 NM_001561 +chr1 7844762 7905237 NM_016831 +chr1 9164475 9189229 NM_024980 +chr1 9294862 9331394 NM_004285 +chr1 9299902 9331394 NM_001282587 +chr1 8412463 8877699 NM_012102 +chr1 8412463 8877699 NM_001042681 +chr1 9789078 9884550 NM_014944 +chr1 9908333 9970316 NM_020248 +chr1 10270763 10441661 NM_015074 +chr1 10270763 10368655 NM_183416 +chr1 10093040 10241296 NM_006048 +chr1 10093040 10241296 NM_001105562 +chr1 9908333 9970316 NM_001012329 +chr1 9789078 9884550 NM_001009566 +chr1 11126675 11159938 NM_002685 +chr1 11166587 11322608 NM_004958 +chr1 11006529 11042094 NM_001170754 +chr1 10707262 10856733 NM_017766 +chr1 10535002 10690815 NM_004565 +chr1 10696665 10856733 NM_001079843 +chr1 11126675 11159938 NM_001001998 +chr1 12040237 12073572 NM_014874 +chr1 12123433 12204264 NM_001243 +chr1 11796141 11810828 NM_020350 +chr1 12040237 12073572 NM_001127660 +chr1 11796141 11810828 NM_001040195 +chr1 12290112 12572098 NM_015378 +chr1 12290112 12572098 NM_018156 +chr1 11796141 11810828 NM_001040196 +chr1 11796141 11810828 NM_001040194 +chr1 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NM_003196 +chr1 23410515 23495351 NM_001142546 +chr1 24480646 24513765 NM_170743 +chr1 24742244 24799473 NM_020448 +chr1 24480646 24513765 NM_173065 +chr1 24480646 24513765 NM_173064 +chr1 24882566 24935818 NM_001010980 +chr1 25688739 25747363 NM_138617 +chr1 25688739 25747363 NM_138616 +chr1 25757348 25826698 NM_001282564 +chr1 25943958 26112698 NM_020379 +chr1 25688739 25747363 NM_020485 +chr1 25757348 25826698 NM_018202 +chr1 25688739 25747363 NM_138618 +chr1 25943958 26112698 NM_001289010 +chr1 26856248 26901520 NM_002953 +chr1 26737268 26756219 NM_024674 +chr1 26606212 26608013 NM_031286 +chr1 27648635 27662891 NM_032125 +chr1 27730733 27816678 NM_006990 +chr1 27730733 27816678 NM_001201404 +chr1 27648635 27662891 NR_037580 +chr1 27648635 27662891 NR_037577 +chr1 27648635 27662891 NR_037576 +chr1 27860755 27930143 NM_001029882 +chr1 28832454 28865708 NR_030725 +chr1 28832454 28837404 NR_036473 +chr1 28929608 28969604 NM_001135218 +chr1 28696092 28826881 NM_001048183 +chr1 28929608 28969604 NM_005644 +chr1 28832454 28837404 NR_002909 +chr1 28832454 28865708 NR_030726 +chr1 28832454 28865708 NM_001048199 +chr1 29563027 29653325 NM_005704 +chr1 29563027 29653325 NM_133177 +chr1 29563027 29653325 NM_133178 +chr1 29563027 29653325 NM_001195001 +chr1 29474249 29508637 NM_005626 +chr1 31184123 31196432 NM_002379 +chr1 31191618 31199593 NR_034182 +chr1 32372021 32403988 NM_080391 +chr1 32372021 32385259 NM_001195100 +chr1 32372021 32385259 NM_001195101 +chr1 33145506 33168361 NM_030786 +chr1 32757707 32799224 NM_004964 +chr1 33145506 33168361 NM_001161708 +chr1 33283118 33324480 NM_022753 +chr1 32573643 32642168 NM_012316 +chr1 33004771 33071542 NM_001040441 +chr1 33402049 33430286 NM_153341 +chr1 33283042 33324480 NM_001256121 +chr1 33402049 33430286 NM_001127361 +chr1 33938231 33961995 NM_145238 +chr1 33789223 33841194 NM_198040 +chr1 34334556 34351059 NR_038372 +chr1 35734567 35887545 NM_005095 +chr1 35899090 36023037 NM_024874 +chr1 36396682 36522063 NM_177422 +chr1 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42801548 NM_001198850 +chr1 42642209 42800636 NM_001198851 +chr1 42312859 42501596 NR_038261 +chr1 42312859 42384496 NR_038260 +chr1 41972035 42384378 NM_024503 +chr1 42846467 42889900 NM_173642 +chr1 43638000 43676549 NM_001167965 +chr1 43253660 43263901 NM_001242750 +chr1 43766565 43788781 NM_001253357 +chr1 43766565 43788781 NM_005424 +chr1 43638000 43676549 NM_152498 +chr1 43638000 43720029 NM_001195831 +chr1 43855555 43919918 NM_015284 +chr1 44686741 44820939 NM_024066 +chr1 44173203 44396837 NR_073016 +chr1 44173203 44396837 NR_073023 +chr1 44173203 44396837 NM_174971 +chr1 44173203 44396837 NM_174969 +chr1 44173203 44396837 NM_174968 +chr1 44173203 44396837 NM_174967 +chr1 44173203 44396837 NM_174966 +chr1 44173203 44396837 NM_174965 +chr1 44173203 44396837 NM_174964 +chr1 44173203 44396837 NM_006279 +chr1 44173203 44396837 NM_001270465 +chr1 44173203 44396837 NM_001270466 +chr1 44173203 44396837 NM_174963 +chr1 44173203 44396837 NM_001270462 +chr1 44173203 44396837 NM_001270459 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4619551 NR_029633 +chr6_cox_hap2 4701187 4702525 NM_001265595 +chr6_cox_hap2 4703244 4710979 NM_001243738 +chr6_cox_hap2 4598057 4604081 NM_001163771 +chr6_cox_hap2 4605197 4612307 NM_021976 +chr6_cox_hap2 4620115 4624329 NM_002931 +chr6_cox_hap2 4703244 4710979 NM_004761 +chr6_cox_hap2 4701187 4702525 NM_014260 +chr6_cox_hap2 4612436 4616048 NM_006979 +chr6_cox_hap2 4701225 4702525 NM_001185181 +chr6_cox_hap2 4612436 4616048 NM_001077516 +chr6_cox_hap2 4683661 4688091 NM_022551 +chr6_cox_hap2 4690689 4701118 NM_005452 +chr6_cox_hap2 4661138 4666493 NR_044997 +chr6_cox_hap2 4605197 4612307 NM_001270401 +chr6_cox_hap2 4701187 4702525 NM_001265596 +chr6_cox_hap2 4698817 4698880 NR_106933 +chr6_cox_hap2 4701835 4701916 NR_106892 +chr6_cox_hap2 4612436 4616048 NM_001288777 +chr6_cox_hap2 4661874 4683552 NM_001289174 +chr6_cox_hap2 4661874 4683552 NM_001289175 +chr6_cox_hap2 4661874 4683552 NM_001289176 +chr6_cox_hap2 4661874 4683552 NM_022553 +chr6_cox_hap2 4725993 4729534 NM_001145338 +chr6_cox_hap2 4730148 4734611 NM_001350 +chr6_cox_hap2 4730148 4734611 NM_001141969 +chr6_cox_hap2 4725993 4729327 NM_005453 +chr6_cox_hap2 4730148 4734611 NM_001141970 +chr6_cox_hap2 4730148 4734611 NM_001254717 +chr6_dbb_hap3 3133118 3151066 NM_006709 +chr6_dbb_hap3 3133118 3151066 NM_025256 +chr6_dbb_hap3 3133118 3150565 NM_001289413 +chr6_dbb_hap3 130811 134864 NR_033379 +chr6_dbb_hap3 1832804 1852944 NM_001025091 +chr6_dbb_hap3 1832804 1852944 NM_001090 +chr6_dbb_hap3 1262133 1322691 NR_026751 +chr6_dbb_hap3 1961243 1979117 NM_014641 +chr6_dbb_hap3 1495493 1587559 NR_052012 +chr6_dbb_hap3 1548842 1588581 NR_024052 +chr6_dbb_hap3 1548842 1588581 NR_024053 +chr6_dbb_hap3 1548842 1588581 NR_102327 +chr6_dbb_hap3 1548842 1588581 NR_102326 +chr6_dbb_hap3 2993298 3018206 NR_037846 +chr6_dbb_hap3 2993298 3016037 NM_025259 +chr6_dbb_hap3 2874021 2891126 NM_004638 +chr6_dbb_hap3 2874021 2891126 NM_080686 +chr6_dbb_hap3 2993298 3016037 NM_002441 +chr6_dbb_hap3 2993298 3016037 NM_172166 +chr6_dbb_hap3 2993298 3016037 NM_172165 +chr6_dbb_hap3 2748076 2764495 NM_001289160 +chr6_dbb_hap3 2751242 2764495 NM_001289161 +chr6_dbb_hap3 2751242 2764495 NM_005931 +chr6_dbb_hap3 4062065 4066351 NM_002120 +chr6_dbb_hap3 3268154 3282410 NM_001252204 +chr6_dbb_hap3 3268154 3282411 NM_001242823 +chr6_dbb_hap3 3268154 3282410 NM_007293 +chr6_dbb_hap3 3268154 3282411 NM_001002029 +chr6_dbb_hap3 4313684 4329894 NM_001242525 +chr6_dbb_hap3 4325041 4338804 NM_002121 +chr6_dbb_hap3 4313684 4329894 NM_001242524 +chr6_dbb_hap3 307410 347926 NM_001195202 +chr6_dbb_hap3 315400 316363 NM_030903 +chr6_dbb_hap3 266004 276448 NM_001010877 +chr6_dbb_hap3 357393 358499 NM_001005226 +chr6_dbb_hap3 382996 384071 NM_001005216 +chr6_dbb_hap3 444725 445766 NM_030905 +chr6_dbb_hap3 644655 646524 NM_030959 +chr6_dbb_hap3 577917 578883 NM_030946 +chr6_dbb_hap3 667732 668765 NM_013936 +chr6_dbb_hap3 696616 698845 NM_013937 +chr6_dbb_hap3 757873 759010 NM_052967 +chr6_dbb_hap3 711045 712084 NM_013941 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+chr6_dbb_hap3 928110 943503 NM_001008228 +chr6_dbb_hap3 1095376 1099520 NM_002127 +chr6_dbb_hap3 1060475 1066207 NM_001207043 +chr6_dbb_hap3 1059600 1061643 NR_002139 +chr6_dbb_hap3 1150552 1153861 NR_001434 +chr6_dbb_hap3 1273220 1275061 NR_103542 +chr6_dbb_hap3 1187370 1189952 NR_001317 +chr6_dbb_hap3 1267090 1271076 NR_024240 +chr6_dbb_hap3 1203607 1207037 NM_002116 +chr6_dbb_hap3 1236225 1239512 NR_028032 +chr6_dbb_hap3 1203607 1207037 NM_001242758 +chr6_dbb_hap3 1322746 1326410 NM_014596 +chr6_dbb_hap3 1328655 1331832 NM_021959 +chr6_dbb_hap3 1424691 1434182 NM_033229 +chr6_dbb_hap3 1322746 1326410 NM_170783 +chr6_dbb_hap3 1413448 1422435 NM_006778 +chr6_dbb_hap3 1364398 1374585 NM_007028 +chr6_dbb_hap3 1322746 1326410 NM_001278785 +chr6_dbb_hap3 1331766 1337350 NM_170769 +chr6_dbb_hap3 1413448 1422435 NM_052828 +chr6_dbb_hap3 1331766 1337352 NM_025236 +chr6_dbb_hap3 1322746 1326410 NR_103864 +chr6_dbb_hap3 1397610 1410237 NM_001286633 +chr6_dbb_hap3 1322746 1326410 NM_001278786 +chr6_dbb_hap3 1398235 1410237 NM_138700 +chr6_dbb_hap3 1521015 1528405 NR_027822 +chr6_dbb_hap3 1445911 1474955 NM_001242783 +chr6_dbb_hap3 1445911 1474955 NM_003449 +chr6_dbb_hap3 1522953 1522994 NR_106951 +chr6_dbb_hap3 1588268 1605160 NM_021253 +chr6_dbb_hap3 1606559 1608289 NM_001199121 +chr6_dbb_hap3 1606559 1608289 NM_024839 +chr6_dbb_hap3 1590736 1608289 NM_001199119 +chr6_dbb_hap3 1588655 1605160 NM_172016 +chr6_dbb_hap3 1606559 1608289 NM_001199120 +chr6_dbb_hap3 1818117 1826105 NM_001077497 +chr6_dbb_hap3 1818117 1826105 NM_025263 +chr6_dbb_hap3 1750822 1755622 NM_005516 +chr6_dbb_hap3 1802785 1819003 NM_005275 +chr6_dbb_hap3 1879123 1887812 NM_014046 +chr6_dbb_hap3 1861814 1878722 NM_002714 +chr6_dbb_hap3 1888250 1906085 NM_024909 +chr6_dbb_hap3 1937827 1948755 NM_001134870 +chr6_dbb_hap3 1937827 1949334 NM_133471 +chr6_dbb_hap3 1914526 1934492 NM_001164239 +chr6_dbb_hap3 1949485 1952859 NM_007243 +chr6_dbb_hap3 1908452 1914618 NM_001161376 +chr6_dbb_hap3 1914526 1934492 NM_003587 +chr6_dbb_hap3 1845749 1845835 NR_030615 +chr6_dbb_hap3 1888252 1906085 NM_001254952 +chr6_dbb_hap3 1949485 1952568 NM_001270710 +chr6_dbb_hap3 1949485 1952568 NM_001270709 +chr6_dbb_hap3 1949485 1952568 NM_001270707 +chr6_dbb_hap3 1908452 1914618 NM_145029 +chr6_dbb_hap3 1861814 1878722 NR_072994 +chr6_dbb_hap3 1908452 1914618 NM_001109938 +chr6_dbb_hap3 1888300 1908235 NM_001031722 +chr6_dbb_hap3 1949485 1952568 NR_073066 +chr6_dbb_hap3 1949485 1952568 NR_073065 +chr6_dbb_hap3 1949485 1952162 NR_073072 +chr6_dbb_hap3 1949485 1952568 NM_001270708 +chr6_dbb_hap3 1989168 2004112 NM_005803 +chr6_dbb_hap3 1981814 1986853 NM_178014 +chr6_dbb_hap3 2004634 2005986 NM_003897 +chr6_dbb_hap3 2150566 2162051 NM_001202522 +chr6_dbb_hap3 2146858 2162051 NM_001202523 +chr6_dbb_hap3 2176093 2188360 NM_020442 +chr6_dbb_hap3 2202892 2216112 NM_080870 +chr6_dbb_hap3 2150566 2162051 NM_001202521 +chr6_dbb_hap3 2176219 2188360 NM_001167734 +chr6_dbb_hap3 2145962 2162051 NM_001954 +chr6_dbb_hap3 2150566 2162051 NM_013994 +chr6_dbb_hap3 2176093 2188360 NM_001167733 +chr6_dbb_hap3 2170088 2175992 NM_001517 +chr6_dbb_hap3 2193236 2194062 NM_205854 +chr6_dbb_hap3 2146428 2162051 NM_013993 +chr6_dbb_hap3 2152761 2152851 NR_039783 +chr6_dbb_hap3 2267839 2297633 NM_001198815 +chr6_dbb_hap3 2318405 2324835 NR_003948 +chr6_dbb_hap3 2245595 2251781 NM_001010909 +chr6_dbb_hap3 2438652 2442818 NR_026816 +chr6_dbb_hap3 2407345 2422694 NM_001105563 +chr6_dbb_hap3 2423430 2429116 NM_007109 +chr6_dbb_hap3 2462676 2468882 NR_026791 +chr6_dbb_hap3 2380036 2385420 NM_001264 +chr6_dbb_hap3 2379779 2405007 NM_014068 +chr6_dbb_hap3 2429237 2435612 NM_002701 +chr6_dbb_hap3 2407345 2423143 NM_019052 +chr6_dbb_hap3 2429237 2432086 NM_001285987 +chr6_dbb_hap3 2429237 2432086 NM_001173531 +chr6_dbb_hap3 2376171 2377504 NM_014070 +chr6_dbb_hap3 2402448 2404265 NM_014069 +chr6_dbb_hap3 2423430 2429116 NM_001077511 +chr6_dbb_hap3 2407345 2422694 NM_001105564 +chr6_dbb_hap3 2429237 2432086 NM_203289 +chr6_dbb_hap3 2429237 2432086 NM_001285986 +chr6_dbb_hap3 2532133 2535511 NM_001243042 +chr6_dbb_hap3 2532133 2535511 NM_002117 +chr6_dbb_hap3 2724339 2725519 NR_002812 +chr6_dbb_hap3 2800925 2812171 NM_005007 +chr6_dbb_hap3 2869363 2870373 NM_032955 +chr6_dbb_hap3 2783576 2795830 NR_037852 +chr6_dbb_hap3 2839498 2842231 NM_205839 +chr6_dbb_hap3 2800201 2812171 NM_001144962 +chr6_dbb_hap3 2800925 2812171 NM_001144961 +chr6_dbb_hap3 2833875 2835743 NM_002341 +chr6_dbb_hap3 2839498 2842231 NM_205838 +chr6_dbb_hap3 2840519 2842231 NM_007161 +chr6_dbb_hap3 2797805 2800199 NM_001204078 +chr6_dbb_hap3 2800201 2812171 NM_001144963 +chr6_dbb_hap3 2868568 2870373 NM_004847 +chr6_dbb_hap3 2797805 2800199 NM_130463 +chr6_dbb_hap3 2868607 2870373 NM_001623 +chr6_dbb_hap3 2783576 2795830 NM_004640 +chr6_dbb_hap3 2840519 2842231 NM_205840 +chr6_dbb_hap3 2840018 2842231 NM_205837 +chr6_dbb_hap3 2842204 2846307 NM_001145466 +chr6_dbb_hap3 2825414 2827641 NM_001159740 +chr6_dbb_hap3 2794455 2794533 NR_003065 +chr6_dbb_hap3 2876430 2876562 NR_002971 +chr6_dbb_hap3 2828884 2831653 NM_000594 +chr6_dbb_hap3 2842204 2846307 NM_147130 +chr6_dbb_hap3 2833875 2835743 NM_009588 +chr6_dbb_hap3 2840519 2842231 NM_001166538 +chr6_dbb_hap3 2839498 2842231 NR_029461 +chr6_dbb_hap3 2825609 2827641 NM_000595 +chr6_dbb_hap3 2783576 2800199 NR_037853 +chr6_dbb_hap3 2842595 2846307 NM_001145467 +chr6_dbb_hap3 2839498 2842231 NR_029462 +chr6_dbb_hap3 2789730 2789806 NR_003140 +chr6_dbb_hap3 2783576 2795830 NM_080598 +chr6_dbb_hap3 2797805 2800199 NM_138282 +chr6_dbb_hap3 2782319 2783589 NM_001011700 +chr6_dbb_hap3 2914584 2919640 NM_001199237 +chr6_dbb_hap3 2965322 2967412 NR_024541 +chr6_dbb_hap3 2914584 2919218 NM_001199238 +chr6_dbb_hap3 2924307 2925807 NM_021221 +chr6_dbb_hap3 2892375 2906056 NM_080703 +chr6_dbb_hap3 2976690 2980055 NM_025260 +chr6_dbb_hap3 2976690 2980055 NM_138274 +chr6_dbb_hap3 2968702 2971151 NM_021246 +chr6_dbb_hap3 2976690 2980055 NM_138273 +chr6_dbb_hap3 2919235 2923427 NM_001282385 +chr6_dbb_hap3 2930040 2933731 NM_025262 +chr6_dbb_hap3 2909249 2911566 NM_019101 +chr6_dbb_hap3 2940297 2956709 NM_021160 +chr6_dbb_hap3 2911653 2914128 NM_021184 +chr6_dbb_hap3 2965687 2967412 NR_003673 +chr6_dbb_hap3 2976690 2980055 NM_138275 +chr6_dbb_hap3 2914584 2918986 NM_001199240 +chr6_dbb_hap3 2976690 2980055 NM_138272 +chr6_dbb_hap3 2983926 2989893 NM_001287594 +chr6_dbb_hap3 2914584 2919218 NM_001199239 +chr6_dbb_hap3 2980385 2983608 NM_013974 +chr6_dbb_hap3 2983926 2989912 NM_001288 +chr6_dbb_hap3 2892375 2906056 NM_001199697 +chr6_dbb_hap3 2905765 2911566 NR_045828 +chr6_dbb_hap3 2892375 2906056 NM_001199698 +chr6_dbb_hap3 2919235 2923427 NM_001320 +chr6_dbb_hap3 2976690 2980055 NM_138277 +chr6_dbb_hap3 2940297 2956422 NR_033488 +chr6_dbb_hap3 2940297 2956709 NR_033489 +chr6_dbb_hap3 2983926 2990666 NM_001287593 +chr6_dbb_hap3 2971994 2975081 NM_025261 +chr6_dbb_hap3 2914584 2918758 NM_033177 +chr6_dbb_hap3 2892375 2906056 NM_004639 +chr6_dbb_hap3 2940297 2956422 NM_001177515 +chr6_dbb_hap3 2954377 2954440 NR_039789 +chr6_dbb_hap3 2892375 2906056 NM_080702 +chr6_dbb_hap3 2892375 2905749 NM_001098534 +chr6_dbb_hap3 2905765 2911566 NM_001256169 +chr6_dbb_hap3 2887135 2887207 NR_106890 +chr6_dbb_hap3 2960255 2963944 NM_001003693 +chr6_dbb_hap3 3116555 3132405 NM_001178044 +chr6_dbb_hap3 3030878 3049294 NM_006295 +chr6_dbb_hap3 3050750 3060344 NM_021177 +chr6_dbb_hap3 3088626 3088689 NR_002745 +chr6_dbb_hap3 3090438 3090502 NR_002742 +chr6_dbb_hap3 3088278 3093129 NM_001287488 +chr6_dbb_hap3 3112414 3116295 NM_000434 +chr6_dbb_hap3 3088278 3093129 NM_001287486 +chr6_dbb_hap3 3116555 3131030 NM_001178045 +chr6_dbb_hap3 3116555 3132405 NM_025257 +chr6_dbb_hap3 3018952 3030690 NM_025258 +chr6_dbb_hap3 3081098 3083618 NM_005346 +chr6_dbb_hap3 3068877 3071306 NM_005345 +chr6_dbb_hap3 3088278 3093129 NM_001287487 +chr6_dbb_hap3 3088278 3093129 NM_001287485 +chr6_dbb_hap3 3088278 3093129 NM_001287483 +chr6_dbb_hap3 3016354 3018206 NM_001039651 +chr6_dbb_hap3 3088278 3093129 NM_001040437 +chr6_dbb_hap3 3062982 3068422 NM_005527 +chr6_dbb_hap3 3088278 3093129 NM_001040438 +chr6_dbb_hap3 3088278 3093129 NM_001287482 +chr6_dbb_hap3 3088278 3093129 NM_001287484 +chr6_dbb_hap3 3154357 3199039 NM_001178063 +chr6_dbb_hap3 3235414 3256039 NM_001252204 +chr6_dbb_hap3 3205451 3212447 NM_002904 +chr6_dbb_hap3 3180840 3199039 NM_000063 +chr6_dbb_hap3 3267100 3267544 NM_004197 +chr6_dbb_hap3 3235414 3256039 NM_007293 +chr6_dbb_hap3 3258995 3262269 NR_040090 +chr6_dbb_hap3 3212163 3223115 NM_006929 +chr6_dbb_hap3 3261779 3266633 NM_032470 +chr6_dbb_hap3 3225228 3234804 NM_004197 +chr6_dbb_hap3 3235414 3256040 NM_001242823 +chr6_dbb_hap3 3151143 3199039 NM_001282457 +chr6_dbb_hap3 3224534 3234804 NR_026717 +chr6_dbb_hap3 3225228 3234804 NM_032454 +chr6_dbb_hap3 3180840 3199039 NM_001145903 +chr6_dbb_hap3 3258941 3262295 NM_001128590 +chr6_dbb_hap3 3152975 3155351 NM_181842 +chr6_dbb_hap3 3210198 3210300 NR_031601 +chr6_dbb_hap3 3258941 3262295 NM_000500 +chr6_dbb_hap3 3180840 3188422 NM_001282459 +chr6_dbb_hap3 3180840 3199039 NM_001282458 +chr6_dbb_hap3 3223170 3225615 NM_005510 +chr6_dbb_hap3 3267100 3267544 NM_032454 +chr6_dbb_hap3 3261779 3266383 NR_001284 +chr6_dbb_hap3 3187837 3195087 NR_104191 +chr6_dbb_hap3 3199308 3205449 NM_001710 +chr6_dbb_hap3 3235414 3256040 NM_001002029 +chr6_dbb_hap3 3400948 3404884 NR_037861 +chr6_dbb_hap3 3362218 3375189 NM_004381 +chr6_dbb_hap3 3399751 3401315 NR_037170 +chr6_dbb_hap3 3288147 3356325 NM_019105 +chr6_dbb_hap3 3285308 3288663 NM_000500 +chr6_dbb_hap3 3400948 3404884 NM_001204103 +chr6_dbb_hap3 3375655 3377239 NM_022110 +chr6_dbb_hap3 3400948 3404884 NM_005155 +chr6_dbb_hap3 3288147 3293122 NM_032470 +chr6_dbb_hap3 3362218 3375189 NM_001136153 +chr6_dbb_hap3 3400401 3404884 NM_138717 +chr6_dbb_hap3 3285308 3288663 NM_001128590 +chr6_dbb_hap3 3395310 3398891 NM_030651 +chr6_dbb_hap3 3399751 3401315 NR_037172 +chr6_dbb_hap3 3399751 3401315 NR_037169 +chr6_dbb_hap3 3399751 3401315 NR_037171 +chr6_dbb_hap3 3641411 3653786 NM_019602 +chr6_dbb_hap3 3539721 3618611 NM_006781 +chr6_dbb_hap3 3539721 3618611 NM_001286474 +chr6_dbb_hap3 3637185 3640367 NR_044996 +chr6_dbb_hap3 3539721 3618611 NM_001286475 +chr6_dbb_hap3 3685731 3690942 NM_019111 +chr6_dbb_hap3 4006438 4013897 NM_001198858 +chr6_dbb_hap3 3991725 3997229 NM_020056 +chr6_dbb_hap3 4071135 4087923 NM_018833 +chr6_dbb_hap3 4089871 4094090 NM_004159 +chr6_dbb_hap3 4093240 4095655 NR_037173 +chr6_dbb_hap3 4183742 4190184 NM_002118 +chr6_dbb_hap3 4103315 4109006 NM_002800 +chr6_dbb_hap3 4143278 4152862 NR_037178 +chr6_dbb_hap3 4143278 4152862 NR_037177 +chr6_dbb_hap3 4089871 4093194 NM_148919 +chr6_dbb_hap3 4074732 4087923 NM_000544 +chr6_dbb_hap3 4094363 4103126 NM_000593 +chr6_dbb_hap3 4093240 4095655 NR_037176 +chr6_dbb_hap3 4093240 4095655 NR_037175 +chr6_dbb_hap3 4093240 4095655 NR_037174 +chr6_dbb_hap3 4226964 4230624 NM_001199455 +chr6_dbb_hap3 4226964 4230624 NM_001113182 +chr6_dbb_hap3 4197728 4202240 NM_006120 +chr6_dbb_hap3 4226964 4230624 NM_001199456 +chr6_dbb_hap3 4253308 4258737 NM_002119 +chr6_dbb_hap3 4226964 4230624 NM_005104 +chr6_dbb_hap3 4313684 4322793 NM_033554 +chr6_dbb_hap3 4226964 4230624 NR_037625 +chr6_dbb_hap3 4449909 4453521 NM_001077516 +chr6_dbb_hap3 4435528 4441552 NM_001163771 +chr6_dbb_hap3 4442668 4449780 NM_021976 +chr6_dbb_hap3 4411775 4441552 NM_080679 +chr6_dbb_hap3 4411775 4441552 NM_080680 +chr6_dbb_hap3 4453720 4455915 NM_014234 +chr6_dbb_hap3 4442668 4449780 NM_001270401 +chr6_dbb_hap3 4449909 4453521 NM_006979 +chr6_dbb_hap3 4411775 4441552 NM_080681 +chr6_dbb_hap3 4449909 4453521 NM_001288777 +chr6_dbb_hap3 4567657 4572120 NM_001350 +chr6_dbb_hap3 4528201 4538630 NM_001164267 +chr6_dbb_hap3 4567657 4572120 NM_001141970 +chr6_dbb_hap3 4526238 4527924 NM_003782 +chr6_dbb_hap3 4456918 4457028 NR_029633 +chr6_dbb_hap3 4540756 4548491 NM_001243738 +chr6_dbb_hap3 4538699 4540037 NM_014260 +chr6_dbb_hap3 4563504 4567043 NM_001145338 +chr6_dbb_hap3 4528201 4538630 NM_005452 +chr6_dbb_hap3 4548797 4563487 NM_172209 +chr6_dbb_hap3 4552744 4563487 NM_172208 +chr6_dbb_hap3 4457592 4461806 NM_002931 +chr6_dbb_hap3 4540756 4548491 NM_004761 +chr6_dbb_hap3 4538699 4540037 NM_001265595 +chr6_dbb_hap3 4538737 4540037 NM_001185181 +chr6_dbb_hap3 4567657 4572120 NM_001141969 +chr6_dbb_hap3 4563504 4566836 NM_005453 +chr6_dbb_hap3 4548797 4563487 NM_003190 +chr6_dbb_hap3 4521173 4525603 NM_022551 +chr6_dbb_hap3 4498632 4503987 NR_044997 +chr6_dbb_hap3 4567657 4572120 NM_001254717 +chr6_dbb_hap3 4538699 4540037 NM_001265596 +chr6_dbb_hap3 4536329 4536392 NR_106933 +chr6_dbb_hap3 4539347 4539428 NR_106892 +chr6_dbb_hap3 4499368 4521064 NM_001289174 +chr6_dbb_hap3 4499368 4521064 NM_001289175 +chr6_dbb_hap3 4499368 4521064 NM_001289176 +chr6_dbb_hap3 4499368 4521064 NM_022553 +chr6_mcf_hap5 3144865 3154459 NM_021177 +chr6_mcf_hap5 991650 1359214 NM_018950 +chr6_mcf_hap5 991650 1359214 NM_001098478 +chr6_mcf_hap5 130806 134856 NR_033379 +chr6_mcf_hap5 383133 453829 NM_001005216 +chr6_mcf_hap5 1950031 1966940 NM_002714 +chr6_mcf_hap5 1150097 1295564 NM_002116 +chr6_mcf_hap5 1150097 1295564 NM_001242758 +chr6_mcf_hap5 1950031 1966940 NR_072994 +chr6_mcf_hap5 2877746 2889999 NR_037852 +chr6_mcf_hap5 2355675 2385126 NM_001198815 +chr6_mcf_hap5 3013336 3017527 NM_001282385 +chr6_mcf_hap5 2877746 2889999 NM_080598 +chr6_mcf_hap5 3013336 3017527 NM_001320 +chr6_mcf_hap5 2877746 2889999 NM_004640 +chr6_mcf_hap5 2877746 2894368 NR_037853 +chr6_mcf_hap5 3248658 3293295 NM_001178063 +chr6_mcf_hap5 3275148 3282679 NM_001282459 +chr6_mcf_hap5 3663448 3719274 NM_001286474 +chr6_mcf_hap5 3275148 3293295 NM_001282458 +chr6_mcf_hap5 4061057 4068516 NM_001198858 +chr6_mcf_hap5 3275148 3293295 NM_001145903 +chr6_mcf_hap5 3538366 3543124 NM_022107 +chr6_mcf_hap5 3245441 3293295 NM_001282457 +chr6_mcf_hap5 3275148 3293295 NM_000063 +chr6_mcf_hap5 3388772 3456979 NM_019105 +chr6_mcf_hap5 3664070 3719274 NM_001286475 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927946 943331 NM_206810 +chr6_mcf_hap5 927946 943331 NM_002433 +chr6_mcf_hap5 991650 993878 NM_001098479 +chr6_mcf_hap5 943350 948108 NM_001109809 +chr6_mcf_hap5 1019117 1019459 NR_001590 +chr6_mcf_hap5 927946 943331 NM_206812 +chr6_mcf_hap5 927946 943331 NM_001170418 +chr6_mcf_hap5 927946 943331 NM_206809 +chr6_mcf_hap5 927946 943331 NM_206814 +chr6_mcf_hap5 927946 943331 NM_206811 +chr6_mcf_hap5 927946 943331 NM_001008229 +chr6_mcf_hap5 927946 943331 NM_001008228 +chr6_mcf_hap5 1150189 1153498 NR_001434 +chr6_mcf_hap5 1095034 1099178 NM_002127 +chr6_mcf_hap5 1060141 1065864 NM_001207043 +chr6_mcf_hap5 1059266 1061309 NR_002139 +chr6_mcf_hap5 1361741 1363582 NR_103542 +chr6_mcf_hap5 1410917 1414584 NM_170783 +chr6_mcf_hap5 1410917 1414584 NM_001278785 +chr6_mcf_hap5 1419940 1425524 NM_170769 +chr6_mcf_hap5 1355611 1359597 NR_024240 +chr6_mcf_hap5 1416829 1420006 NM_021959 +chr6_mcf_hap5 1410917 1414584 NM_014596 +chr6_mcf_hap5 1419940 1425526 NM_025236 +chr6_mcf_hap5 1350651 1410862 NR_026751 +chr6_mcf_hap5 1410917 1414584 NR_103864 +chr6_mcf_hap5 1324752 1328039 NR_028032 +chr6_mcf_hap5 1410917 1414584 NM_001278786 +chr6_mcf_hap5 1534068 1562952 NM_001242783 +chr6_mcf_hap5 1501606 1510596 NM_006778 +chr6_mcf_hap5 1534068 1562952 NM_003449 +chr6_mcf_hap5 1452556 1462748 NM_007028 +chr6_mcf_hap5 1501606 1510596 NM_052828 +chr6_mcf_hap5 1485781 1498402 NM_001286633 +chr6_mcf_hap5 1512863 1522354 NM_033229 +chr6_mcf_hap5 1486406 1498402 NM_138700 +chr6_mcf_hap5 1921023 1941163 NM_001025091 +chr6_mcf_hap5 1891008 1907225 NM_005275 +chr6_mcf_hap5 1906339 1914327 NM_001077497 +chr6_mcf_hap5 1906339 1914327 NM_025263 +chr6_mcf_hap5 1921023 1941163 NM_001090 +chr6_mcf_hap5 1839046 1843846 NM_005516 +chr6_mcf_hap5 1933962 1934048 NR_030615 +chr6_mcf_hap5 2077393 2090996 NM_005803 +chr6_mcf_hap5 2026050 2036978 NM_001134870 +chr6_mcf_hap5 1976518 1996456 NM_001031722 +chr6_mcf_hap5 1976468 1994306 NM_024909 +chr6_mcf_hap5 2026050 2037557 NM_133471 +chr6_mcf_hap5 1996673 2002845 NM_001161376 +chr6_mcf_hap5 2037708 2040791 NR_073065 +chr6_mcf_hap5 2037708 2041082 NM_007243 +chr6_mcf_hap5 2049467 2067341 NM_014641 +chr6_mcf_hap5 2002753 2022715 NM_001164239 +chr6_mcf_hap5 1996673 2002845 NM_145029 +chr6_mcf_hap5 1976470 1994306 NM_001254952 +chr6_mcf_hap5 2070039 2075078 NM_178014 +chr6_mcf_hap5 2037708 2040791 NM_001270709 +chr6_mcf_hap5 2037708 2040791 NM_001270710 +chr6_mcf_hap5 2037708 2040791 NM_001270707 +chr6_mcf_hap5 1967341 1976030 NM_014046 +chr6_mcf_hap5 2002753 2022715 NM_003587 +chr6_mcf_hap5 2037708 2040791 NM_001270708 +chr6_mcf_hap5 1996673 2002845 NM_001109938 +chr6_mcf_hap5 2037708 2040791 NR_073066 +chr6_mcf_hap5 2037708 2040385 NR_073072 +chr6_mcf_hap5 2264062 2276199 NM_001167734 +chr6_mcf_hap5 2257931 2263835 NM_001517 +chr6_mcf_hap5 2234713 2241824 NM_001202523 +chr6_mcf_hap5 2263936 2276199 NM_001167733 +chr6_mcf_hap5 2233817 2241824 NM_001954 +chr6_mcf_hap5 2290717 2300850 NM_080870 +chr6_mcf_hap5 2263936 2276199 NM_020442 +chr6_mcf_hap5 2281065 2281891 NM_205854 +chr6_mcf_hap5 2234283 2241824 NM_013993 +chr6_mcf_hap5 2240616 2240706 NR_039783 +chr6_mcf_hap5 2333430 2339626 NM_001010909 +chr6_mcf_hap5 2460924 2462257 NM_014070 +chr6_mcf_hap5 2403159 2409579 NR_003948 +chr6_mcf_hap5 2464532 2489814 NM_014068 +chr6_mcf_hap5 2464789 2470173 NM_001264 +chr6_mcf_hap5 2487255 2489072 NM_014069 +chr6_mcf_hap5 2547502 2553759 NR_026791 +chr6_mcf_hap5 2514036 2520412 NM_002701 +chr6_mcf_hap5 2617062 2620440 NM_002117 +chr6_mcf_hap5 2617062 2620440 NM_001243042 +chr6_mcf_hap5 2492151 2507523 NM_001105563 +chr6_mcf_hap5 2508259 2513915 NM_007109 +chr6_mcf_hap5 2514036 2516885 NM_203289 +chr6_mcf_hap5 2523452 2527623 NR_026816 +chr6_mcf_hap5 2508259 2513915 NM_001077511 +chr6_mcf_hap5 2492151 2507523 NM_001105564 +chr6_mcf_hap5 2492151 2507972 NM_019052 +chr6_mcf_hap5 2514036 2516885 NM_001285987 +chr6_mcf_hap5 2514036 2516885 NM_001285986 +chr6_mcf_hap5 2514036 2516885 NM_001173531 +chr6_mcf_hap5 2701428 2704782 NM_005514 +chr6_mcf_hap5 2702780 2702884 NR_106951 +chr6_mcf_hap5 2811903 2813367 NR_040662 +chr6_mcf_hap5 2818785 2819965 NR_002812 +chr6_mcf_hap5 2876489 2877759 NM_001011700 +chr6_mcf_hap5 2842420 2858656 NM_001289160 +chr6_mcf_hap5 2845595 2858656 NM_001289161 +chr6_mcf_hap5 2845595 2858656 NM_005931 +chr6_mcf_hap5 2933658 2936387 NM_205839 +chr6_mcf_hap5 3008685 3013319 NM_001199238 +chr6_mcf_hap5 2891974 2894368 NM_130463 +chr6_mcf_hap5 2895094 2906339 NM_005007 +chr6_mcf_hap5 2963482 2964492 NM_032955 +chr6_mcf_hap5 2934178 2936387 NM_205837 +chr6_mcf_hap5 2891974 2894368 NM_001204078 +chr6_mcf_hap5 2894370 2906339 NM_001144962 +chr6_mcf_hap5 2895094 2906339 NM_001144961 +chr6_mcf_hap5 2986491 3000157 NM_080702 +chr6_mcf_hap5 3003350 3005667 NM_019101 +chr6_mcf_hap5 3005754 3008229 NM_021184 +chr6_mcf_hap5 2968139 2985242 NM_004638 +chr6_mcf_hap5 2933658 2936387 NR_029462 +chr6_mcf_hap5 2986491 3000157 NM_001199698 +chr6_mcf_hap5 2928041 2929908 NM_002341 +chr6_mcf_hap5 2894370 2906339 NM_001144963 +chr6_mcf_hap5 2986491 2999850 NM_001098534 +chr6_mcf_hap5 3008685 3013740 NM_001199237 +chr6_mcf_hap5 2968139 2985242 NM_080686 +chr6_mcf_hap5 2962726 2964492 NM_001623 +chr6_mcf_hap5 2934679 2936387 NM_205840 +chr6_mcf_hap5 2933658 2936387 NM_205838 +chr6_mcf_hap5 3008685 3013087 NM_001199240 +chr6_mcf_hap5 2936751 2940463 NM_001145467 +chr6_mcf_hap5 2891974 2894368 NM_138282 +chr6_mcf_hap5 2962687 2964492 NM_004847 +chr6_mcf_hap5 2936360 2940463 NM_147130 +chr6_mcf_hap5 3008685 3013319 NM_001199239 +chr6_mcf_hap5 2888624 2888702 NR_003065 +chr6_mcf_hap5 2970548 2970680 NR_002971 +chr6_mcf_hap5 2919579 2921806 NM_001159740 +chr6_mcf_hap5 2919774 2921806 NM_000595 +chr6_mcf_hap5 2934679 2936387 NM_007161 +chr6_mcf_hap5 2986491 3000157 NM_001199697 +chr6_mcf_hap5 2923049 2925818 NM_000594 +chr6_mcf_hap5 2928041 2929908 NM_009588 +chr6_mcf_hap5 2934679 2936387 NM_001166538 +chr6_mcf_hap5 2933658 2936387 NR_029461 +chr6_mcf_hap5 2999866 3005667 NR_045828 +chr6_mcf_hap5 2986491 3000157 NM_004639 +chr6_mcf_hap5 2986491 3000157 NM_080703 +chr6_mcf_hap5 2936360 2940463 NM_001145466 +chr6_mcf_hap5 3008685 3012859 NM_033177 +chr6_mcf_hap5 2883900 2883976 NR_003140 +chr6_mcf_hap5 2999866 3005667 NM_001256169 +chr6_mcf_hap5 2981251 2981323 NR_106890 +chr6_mcf_hap5 3078040 3084028 NM_001288 +chr6_mcf_hap5 3070803 3074168 NM_138275 +chr6_mcf_hap5 3059437 3061527 NR_024541 +chr6_mcf_hap5 3124993 3143409 NM_006295 +chr6_mcf_hap5 3034405 3050531 NM_001177515 +chr6_mcf_hap5 3070803 3074168 NM_025260 +chr6_mcf_hap5 3087408 3110152 NM_025259 +chr6_mcf_hap5 3062817 3065264 NM_021246 +chr6_mcf_hap5 3087408 3110152 NM_172166 +chr6_mcf_hap5 3070803 3074168 NM_138274 +chr6_mcf_hap5 3024140 3027830 NM_025262 +chr6_mcf_hap5 3078040 3084009 NM_001287594 +chr6_mcf_hap5 3074499 3077722 NM_013974 +chr6_mcf_hap5 3087408 3110152 NM_002441 +chr6_mcf_hap5 3059802 3061527 NR_003673 +chr6_mcf_hap5 3070803 3074168 NM_138277 +chr6_mcf_hap5 3034405 3050818 NM_021160 +chr6_mcf_hap5 3070803 3074168 NM_138272 +chr6_mcf_hap5 3113067 3124805 NM_025258 +chr6_mcf_hap5 3070803 3074168 NM_138273 +chr6_mcf_hap5 3034405 3050531 NR_033488 +chr6_mcf_hap5 3034405 3050818 NR_033489 +chr6_mcf_hap5 3078040 3084782 NM_001287593 +chr6_mcf_hap5 3066107 3069194 NM_025261 +chr6_mcf_hap5 3087408 3110152 NM_172165 +chr6_mcf_hap5 3018407 3019907 NM_021221 +chr6_mcf_hap5 3048486 3048549 NR_039789 +chr6_mcf_hap5 3087408 3112321 NR_037846 +chr6_mcf_hap5 3110469 3112321 NM_001039651 +chr6_mcf_hap5 3054364 3058053 NM_001003693 +chr6_mcf_hap5 3210847 3225321 NM_001178045 +chr6_mcf_hap5 3206706 3210587 NM_000434 +chr6_mcf_hap5 3210847 3226696 NM_025257 +chr6_mcf_hap5 3227409 3244863 NM_001289413 +chr6_mcf_hap5 3227409 3245364 NM_006709 +chr6_mcf_hap5 3247276 3249652 NM_181842 +chr6_mcf_hap5 3210847 3226696 NM_001178044 +chr6_mcf_hap5 3227409 3245364 NM_025256 +chr6_mcf_hap5 3362415 3383039 NM_007293 +chr6_mcf_hap5 3361361 3361805 NM_004197 +chr6_mcf_hap5 3319489 3329068 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NR_037872 +chrUn_gl000218 38785 97454 NR_037871 +chrUn_gl000219 56348 99642 NR_027436 +chrUn_gl000220 112024 112180 NR_003285 +chrUn_gl000220 97128 126696 NR_038958 +chrUn_gl000220 105423 118780 NR_046235 +chrUn_gl000220 155996 156152 NR_003285 +chrUn_gl000222 86422 89304 NM_001124759 +chrUn_gl000222 15193 15277 NR_036235 +chrUn_gl000222 86422 89310 NR_037925 +chrUn_gl000222 74364 81351 NR_040005 +chrUn_gl000222 74364 81241 NR_040004 +chrUn_gl000223 93509 119730 NM_001256279 +chrUn_gl000223 42779 68685 NM_001127372 +chrUn_gl000223 42779 68787 NM_003428 +chrUn_gl000223 93509 119730 NM_019591 +chrUn_gl000223 93509 119730 NM_001256280 +chrUn_gl000223 68856 73418 NR_110091 +chrUn_gl000227 66129 74245 NR_109817 +chrUn_gl000228 76141 77521 NM_001127386 +chrUn_gl000228 112604 114676 NR_038191 +chrUn_gl000228 76141 77521 NM_001127388 +chrUn_gl000228 76141 77521 NM_001278056 +chrUn_gl000228 79447 80827 NM_001278056 +chrUn_gl000228 82753 84133 NM_001127386 +chrUn_gl000228 82753 84133 NM_001127388 +chrUn_gl000228 109201 110581 NM_001278056 +chrUn_gl000228 72835 74215 NM_001127389 +chrUn_gl000228 72835 74215 NM_001127388 +chrUn_gl000228 72835 74215 NM_001278056 +chrUn_gl000228 72835 74215 NM_001127386 +chrUn_gl000228 76141 77521 NM_001127389 +chrUn_gl000228 72835 74215 NM_001164467 +chrUn_gl000228 82753 84133 NM_001164467 +chrUn_gl000228 102589 103969 NM_001164467 +chrUn_gl000228 112507 113887 NM_001278056 +chrUn_gl000228 112507 113887 NM_001127389 +chrUn_gl000228 112507 113887 NM_001127388 +chrUn_gl000228 112507 113887 NM_001127386 +chrUn_gl000228 86059 87439 NM_001127388 +chrUn_gl000228 109201 110581 NM_001127389 +chrUn_gl000228 109201 110581 NM_001127388 +chrUn_gl000228 109201 110581 NM_001127386 +chrUn_gl000228 105895 107275 NM_001278056 +chrUn_gl000228 29338 32226 NM_001199232 +chrUn_gl000228 105895 107275 NM_001164467 +chrUn_gl000228 109201 110581 NM_001164467 +chrUn_gl000228 112507 113887 NM_001164467 +chrUn_gl000228 86059 87439 NM_001278056 +chrUn_gl000228 105895 107275 NM_001127389 +chrUn_gl000228 105895 107275 NM_001127386 +chrUn_gl000228 105895 107275 NM_001127388 +chrUn_gl000228 99283 100663 NM_033178 +chrUn_gl000228 72835 74215 NM_033178 +chrUn_gl000228 86059 87439 NM_001127386 +chrUn_gl000228 86059 87439 NM_001127389 +chrUn_gl000228 76141 77521 NM_033178 +chrUn_gl000228 82753 84133 NM_001278056 +chrUn_gl000228 82753 84133 NM_001127389 +chrUn_gl000228 102589 103969 NM_001278056 +chrUn_gl000228 102589 103969 NM_001127389 +chrUn_gl000228 102589 103969 NM_001127388 +chrUn_gl000228 102589 103969 NM_001127386 +chrUn_gl000228 99283 100663 NM_001127389 +chrUn_gl000228 99283 100663 NM_001127388 +chrUn_gl000228 99283 100663 NM_001127386 +chrUn_gl000228 89365 90745 NM_001278056 +chrUn_gl000228 112507 113887 NM_033178 +chrUn_gl000228 79447 80827 NM_001127389 +chrUn_gl000228 79447 80827 NM_001127386 +chrUn_gl000228 79447 80827 NM_001127388 +chrUn_gl000228 79447 80827 NM_001177376 +chrUn_gl000228 89365 90745 NM_001177376 +chrUn_gl000228 86059 87439 NM_001177376 +chrUn_gl000228 102589 103969 NM_001177376 +chrUn_gl000228 79447 80827 NM_001164467 +chrUn_gl000228 29338 32226 NM_001005217 +chrUn_gl000228 99283 100663 NM_001177376 +chrUn_gl000228 95977 97357 NM_001177376 +chrUn_gl000228 92671 94051 NM_001177376 +chrUn_gl000228 82753 84133 NM_001177376 +chrUn_gl000228 76141 77521 NM_001177376 +chrUn_gl000228 72835 74215 NM_001177376 +chrUn_gl000228 99283 100663 NM_001164467 +chrUn_gl000228 86059 87439 NM_001164467 +chrUn_gl000228 76141 77521 NM_001164467 +chrUn_gl000228 29338 32226 NM_001286820 +chrUn_gl000228 86059 87439 NM_033178 +chrUn_gl000228 82753 84133 NM_033178 +chrUn_gl000228 79447 80827 NM_033178 +chrUn_gl000228 102589 103969 NM_033178 +chrUn_gl000228 105895 107275 NM_033178 +chrUn_gl000228 109201 110581 NM_033178 +chr17_ctg5_hap1 954314 1170453 NM_001256299 +chr17_ctg5_hap1 596065 760700 NM_015443 +chr17_ctg5_hap1 762280 895830 NM_001123066 +chr17_ctg5_hap1 391611 454187 NM_001103154 +chr17_ctg5_hap1 762280 895830 NM_001203252 +chr17_ctg5_hap1 762280 895830 NM_001123067 +chr17_ctg5_hap1 894693 946818 NR_024559 +chr17_ctg5_hap1 128327 183214 NM_014798 +chr17_ctg5_hap1 391582 454600 NM_016632 +chr17_ctg5_hap1 762280 895830 NM_005910 +chr17_ctg5_hap1 596171 760700 NM_001193466 +chr17_ctg5_hap1 762280 895830 NM_016841 +chr17_ctg5_hap1 391611 414020 NM_001039083 +chr17_ctg5_hap1 762280 895830 NM_016835 +chr17_ctg5_hap1 762280 895830 NM_016834 +chr17_ctg5_hap1 128327 183214 NR_027774 +chr17_ctg5_hap1 197720 424115 NR_002940 +chr17_ctg5_hap1 762280 895830 NM_001203251 +chr17_ctg5_hap1 391582 462618 NM_001288812 +chr17_ctg5_hap1 391582 418517 NM_001113738 +chr17_ctg5_hap1 391582 444217 NM_001288811 +chr17_ctg5_hap1 563497 760700 NM_001193465 +chr17_ctg5_hap1 128327 183214 NR_027782 +chr17_ctg5_hap1 391582 444217 NM_001288813 +chr17_ctg5_hap1 1524912 1574839 NR_033799 +chr17_ctg5_hap1 121842 125407 NM_174919 +chr17_ctg5_hap1 86403 118136 NM_199282 +chr17_ctg5_hap1 86403 122788 NM_001282290 +chr17_ctg5_hap1 236131 236665 NM_016632 +chr17_ctg5_hap1 195720 200597 NM_001113738 +chr17_ctg5_hap1 167791 167864 NR_036199 +chr17_ctg5_hap1 167791 167864 NR_036271 +chr17_ctg5_hap1 197705 240669 NM_001006607 +chr17_ctg5_hap1 266211 380618 NM_006178 +chr17_ctg5_hap1 330260 380553 NR_033799 +chr17_ctg5_hap1 266211 380618 NR_040116 +chr17_ctg5_hap1 415626 458604 NM_014834 +chr17_ctg5_hap1 592235 595386 NR_034172 +chr17_ctg5_hap1 543725 545984 NR_026901 +chr17_ctg5_hap1 891433 894424 NR_024560 +chr17_ctg5_hap1 790688 791133 NM_001007532 +chr17_ctg5_hap1 943101 945284 NM_175882 +chr17_ctg5_hap1 954314 1005883 NM_001145148 +chr17_ctg5_hap1 954314 1005883 NM_001145146 +chr17_ctg5_hap1 954314 1005883 NM_001145147 +chr17_ctg5_hap1 954314 1005883 NM_004382 +chr17_ctg5_hap1 1151951 1170451 NR_026680 +chr17_ctg5_hap1 1147639 1150972 NR_026905 +chr17_ctg5_hap1 1151951 1170182 NR_027295 +chr17_ctg5_hap1 1143725 1150972 NR_026906 +chr17_ctg5_hap1 1188438 1190693 NR_026901 +chr17_ctg5_hap1 1407998 1410253 NR_026901 +chr17_ctg5_hap1 1450905 1513884 NM_016632 +chr17_ctg5_hap1 1461295 1513884 NM_001288813 +chr17_ctg5_hap1 1486976 1513884 NM_001113738 +chr17_ctg5_hap1 1481376 1489848 NR_002940 +chr17_ctg5_hap1 1461295 1513884 NM_001288811 +chr1_gl000191_random 36272 50281 NM_006625 +chr1_gl000191_random 38911 50281 NM_001191005 +chr1_gl000191_random 36272 50281 NM_001191009 +chr1_gl000191_random 36272 50281 NM_001191006 +chr1_gl000191_random 38911 50281 NM_054016 +chr1_gl000191_random 36272 50281 NR_034035 +chr1_gl000191_random 36272 50281 NM_001191007 +chr1_gl000192_random 132568 407510 NR_103556 +chr4_gl000193_random 49162 88375 NR_038377 +chr4_gl000194_random 53588 115071 NR_046441 +chr4_gl000194_random 53588 115071 NR_046440 +chr4_gl000194_random 61659 115071 NR_046442 +chr4_gl000194_random 53588 115071 NR_046439 +chr7_gl000195_random 42937 86719 NM_001242480 +chr17_gl000205_random 116622 119732 NR_003682 +chr19_gl000209_random 21910 36449 NM_014219 +chr19_gl000209_random 86690 96155 NM_020535 +chr19_gl000209_random 70070 84658 NM_001282171 +chr19_gl000209_random 115098 129113 NM_014512 +chr19_gl000209_random 57208 68123 NM_002255 +chr19_gl000209_random 57208 68123 NM_001080770 +chr19_gl000209_random 98134 112667 NM_012313 +chr19_gl000209_random 57208 68123 NM_001080772 +chr19_gl000209_random 98111 113132 NM_014513 +chr19_gl000209_random 46645 68123 NM_001258383 +chr19_gl000209_random 86745 96246 NM_001018081 +chr19_gl000209_random 70070 84658 NM_001282170 +chr19_gl000209_random 70070 84658 NM_001083539 +chr19_gl000209_random 131432 145745 NM_012312