Mercurial > repos > yhoogstrate > flaimapper

changeset 23:e0c0fc569303 draft

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Suppressed stderr warning
author yhoogstrate
date Wed, 25 Mar 2015 16:19:39 -0400
parents 79b54b3c4472
children bd695d4cb7c4
files flaimapper-gtf-from-fasta.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/flaimapper-gtf-from-fasta.xml	Wed Mar 25 16:12:12 2015 -0400
+++ b/flaimapper-gtf-from-fasta.xml	Wed Mar 25 16:19:39 2015 -0400
@@ -12,6 +12,9 @@
 		gtf-from-fasta
 			 -o $output
 			    $fasta
+			2> stderr.txt ;
+		
+		grep -v '[fai_load] build FASTA index.' stderr.txt >&amp2 ;
 	</command>
 	
 	<inputs>
@@ -19,7 +22,7 @@
 	</inputs>
 	
 	<outputs>
-		<data format="gtf" name="output" label="${tool.name} on ${fasta}" />
+		<data format="gtf" name="output" label="${tool.name} on ${fasta.name}" />
 	</outputs>
 	
 	<help>