Mercurial > repos > yhoogstrate > flaimapper
changeset 17:be98a7b6c94e draft
Fixed capturing a non-critical warning that's being send to stderr.
| author | yhoogstrate |
|---|---|
| date | Fri, 20 Mar 2015 06:33:35 -0400 |
| parents | 71b580f3a3e8 |
| children | 0e9520cf7587 |
| files | flaimapper.xml |
| diffstat | 1 files changed, 7 insertions(+), 1 deletions(-) [+] |
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--- a/flaimapper.xml Fri Mar 20 06:04:09 2015 -0400 +++ b/flaimapper.xml Fri Mar 20 06:33:35 2015 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="flaimapper" name="FlaiMapper" version="1.1.2.c"> +<tool id="flaimapper" name="FlaiMapper" version="1.1.2.d"> <description>Detect small ncRNA derived fragments using Fragment Location Annotation Identification Mapper.</description> <requirements> <requirement type="package" version="0.8.2.1">pysam</requirement><!-- pysam 0.7.7 ABSOLUTELY CRASHES !!! --> @@ -19,6 +19,12 @@ #for $alignment in $alignments $alignment #end for + + 2> stderr.txt ; + + grep -v '[fai_load] build FASTA index.' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; + + cat stderr.txt >&2 </command> <inputs>