comparison flaimapper-gtf-from-fasta.xml @ 21:262d9457ad84 draft

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20:ac69be28e786

<?xml version="1.0" encoding="UTF-8"?>
<tool id="flaimapper" name="FlaiMapper" version="1.1.5.b">
	<description>Extract GTF file from FASTA file (as FlaiMapper reference).</description>
	<requirements>
		<requirement type="package" version="0.8.2.1">pysam</requirement>
		<requirement type="package" version="1.1.5">flaimapper</requirement>
	</requirements>

	<version_command>flaimapper --version</version_command>
	
	<command>
		gtf-from-fasta
			 -o $output
			 $fasta
	</command>
	
	<inputs>
		<param name="fasta" type="data" format="fasta" label="Fasta sequence corresponding to reference genome" help="" />
	</inputs>
	
	<outputs>
		<data format="gtf" name="output" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])}" />
	</outputs>
	
	<help>
FlaiMapper wrapper for Galaxy
=============================

21:262d9457ad84

<?xml version="1.0" encoding="UTF-8"?>
<tool id="flaimapper-gtf-from-fasta" name="FlaiMapper" version="1.1.5.b">
	<description>Extract GTF file from FASTA file (as FlaiMapper reference).</description>
	<requirements>
		<requirement type="package" version="0.8.2.1">pysam</requirement>
		<requirement type="package" version="1.1.5">flaimapper</requirement>
	</requirements>

	<version_command>flaimapper --version</version_command>
	
	<command>
		gtf-from-fasta
			 -o $output
			    $fasta
	</command>
	
	<inputs>
		<param name="fasta" type="data" format="fasta" label="Fasta sequence corresponding to reference genome" help="" />
	</inputs>
	
	<outputs>
		<data format="gtf" name="output" label="${tool.name} on ${fasta}" />
	</outputs>
	
	<help>
FlaiMapper wrapper for Galaxy
=============================