Mercurial > repos > yhoogstrate > featurecounts_valid_gff

changeset 36:26f6dcdf970f

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Uploaded
author yhoogstrate
date Fri, 07 Feb 2014 11:50:14 -0500
parents 5669aa6422ef
children bdd5f2ecd087
files featurecounts_valid_gff.xml
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/featurecounts_valid_gff.xml	Fri Feb 07 11:42:48 2014 -0500
+++ b/featurecounts_valid_gff.xml	Fri Feb 07 11:50:14 2014 -0500
@@ -126,7 +126,7 @@
 			<option value="tabdel_short">Gene-name "\t" gene-count (tab-delimited)</option>
 		</param>
 		
-		<param name="threads" type="integer" value="2" min="1" label="Number of the CPU threads" />
+		<param name="threads" type="integer" value="2" min="1" label="Number of the CPU threads. Higher numbers only make sense with a higher number of samples." />
 		
 		<conditional name="extended_parameters">
 			<param name="parameters" type="select" label="featureCounts parameters" help="For more advanced featureCounts settings.">
@@ -207,9 +207,12 @@
 
 **Installation**
 
-Make sure you have proper GFF/GTF files (corresponding to your reference genome used for the aligment) uploaded to your history.
+1) Make sure you have proper GFF/GTF files (corresponding to your reference genome used for the aligment) uploaded to your history.
 The source of this file should not be important since this fork can handle both ENSEMBL and UCSC variants of the GTF/GFF format.
 
+2) Make sure that your gene_sets.loc is configured properly as data table. This is generally done by copying the right information into: tool_data_table_conf.xml.
+https://wiki.galaxyproject.org/Admin/Tools/Data%20Tables
+
 **Examples**
 
 **License**