# HG changeset patch
# User yhoogstrate
# Date 1391791814 18000
# Node ID 26f6dcdf970f17cfe6ce2f45428e1ed30091b7f6
# Parent  5669aa6422efb53ff1edbbb2183cd800bec0bef9
Uploaded

diff -r 5669aa6422ef -r 26f6dcdf970f featurecounts_valid_gff.xml
--- a/featurecounts_valid_gff.xml	Fri Feb 07 11:42:48 2014 -0500
+++ b/featurecounts_valid_gff.xml	Fri Feb 07 11:50:14 2014 -0500
@@ -126,7 +126,7 @@
 			<option value="tabdel_short">Gene-name "\t" gene-count (tab-delimited)</option>
 		</param>
 		
-		<param name="threads" type="integer" value="2" min="1" label="Number of the CPU threads" />
+		<param name="threads" type="integer" value="2" min="1" label="Number of the CPU threads. Higher numbers only make sense with a higher number of samples." />
 		
 		<conditional name="extended_parameters">
 			<param name="parameters" type="select" label="featureCounts parameters" help="For more advanced featureCounts settings.">
@@ -207,9 +207,12 @@
 
 **Installation**
 
-Make sure you have proper GFF/GTF files (corresponding to your reference genome used for the aligment) uploaded to your history.
+1) Make sure you have proper GFF/GTF files (corresponding to your reference genome used for the aligment) uploaded to your history.
 The source of this file should not be important since this fork can handle both ENSEMBL and UCSC variants of the GTF/GFF format.
 
+2) Make sure that your gene_sets.loc is configured properly as data table. This is generally done by copying the right information into: tool_data_table_conf.xml.
+https://wiki.galaxyproject.org/Admin/Tools/Data%20Tables
+
 **Examples**
 
 **License**