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view tool_dependencies.xml @ 17:9f42ad6e35e2 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
author yhoogstrate
date Thu, 10 Sep 2015 05:08:57 -0400
parents 0a7893453b61
children a8f95c306536
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<?xml version="1.0"?>
<tool_dependency>
    <package name="featurecounts" version="1.4.6.p1">
        <repository changeset_revision="7a484ebcbf48" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

    <package name="featurecounts2bed" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">
                    mkdir $INSTALL_DIR/bin                                            &amp;&amp;
                    cp $REPOSITORY_INSTALL_DIR/featurecounts2bed.sh $INSTALL_DIR/bin/
                    </action>
                <action type="chmod">
                    <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>