Mercurial > repos > yhoogstrate > featurecounts
comparison tool_dependencies.xml @ 8:1a288d568ac1 draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Thu, 19 Mar 2015 08:08:16 -0400 |
| parents | 2312bedfe2a3 |
| children | b2c1799ed8d1 |
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| 7:2312bedfe2a3 | 8:1a288d568ac1 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="featurecounts" version="1.4.4"> | 3 <package name="featurecounts" version="1.4.6.p1"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="shell_command">wget http://sourceforge.net/projects/subread/files/subread-1.4.4/subread-1.4.4-source.tar.gz && tar -zxvf subread-1.4.4-source.tar.gz && cd subread-1.4.4-source/src/ && make -f Makefile.Linux && cd ../../</action> | 6 <action type="shell_command">wget http://garr.dl.sourceforge.net/project/subread/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz && tar -zxvf subread-1.4.6-p1-source.tar.gz && cd subread-1.4.6-p1-source/src/ && make -f Makefile.Linux && cd ../../</action> |
| 7 <action type="move_file"> | 7 <action type="move_file"> |
| 8 <source>../subread-1.4.4-source/bin/featureCounts</source> | 8 <source>../subread-1.4.6-p1-source/bin/featureCounts</source> |
| 9 <destination>$INSTALL_DIR/bin/</destination> | 9 <destination>$INSTALL_DIR/bin/</destination> |
| 10 </action> | 10 </action> |
| 11 <action type="set_environment"> | 11 <action type="set_environment"> |
| 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 13 <!--<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>--> | 13 <!--<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>--> |