Mercurial > repos > yhoogstrate > featurecounts
annotate README.rst @ 18:a8f95c306536 draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 597fa3df643b54ea93a17448c722f657e3d68b60
| author | yhoogstrate |
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| date | Wed, 07 Oct 2015 11:36:27 -0400 |
| parents | 9f42ad6e35e2 |
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| 7 | 1 FeatureCounts wrapper for Galaxy |
| 2 ================================ | |
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9f42ad6e35e2
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
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4 * http://bioinf.wehi.edu.au/featureCounts/ |
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9f42ad6e35e2
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
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5 * http://subread.sourceforge.net/ |
| 7 | 6 |
| 7 FeatureCounts as part of the SUBREAD package is "a highly efficient and | |
| 8 accurate read summarization program". | |
| 9 | |
| 10 Development | |
| 11 ----------- | |
| 12 | |
| 13 * Repository-Maintainer: Youri Hoogstrate | |
| 8 | 14 * Repository-Developers: Youri Hoogstrate, Marius van den Beek |
| 7 | 15 |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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16 * Repository-Development: https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper |
| 7 | 17 |
| 18 The tool wrapper has been written by Youri Hoogstrate from the Erasmus | |
| 19 Medical Center (Rotterdam, Netherlands) on behalf of the Translational | |
| 20 Research IT (TraIT) project: | |
| 21 | |
| 22 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch | |
| 23 | |
| 24 License | |
| 25 ------- | |
| 26 | |
| 27 **featureCounts**: | |
| 28 | |
| 29 GPL (>=3) | |
| 30 | |
| 31 **featurecounts2bed**: | |
| 32 | |
| 33 GPL (>=3) | |
| 34 | |
| 35 **This wrapper**: | |
| 36 | |
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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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37 ``Copyright (C) 2013-2015 Youri Hoogstrate`` |
| 7 | 38 |
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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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39 ``This program is free software: you can redistribute it and/or modify |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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40 it under the terms of the GNU General Public License as published by |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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41 the Free Software Foundation, either version 3 of the License, or |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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42 (at your option) any later version.`` |
| 7 | 43 |
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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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44 ``This program is distributed in the hope that it will be useful, |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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45 but WITHOUT ANY WARRANTY; without even the implied warranty of |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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46 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
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47 GNU General Public License for more details.`` |
| 7 | 48 |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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49 ``You should have received a copy of the GNU General Public License |
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b486372c8948
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
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50 along with this program. If not, see <http://www.gnu.org/licenses/>.`` |
| 8 | 51 |
| 52 Acknowledgements | |
| 53 ---------------- | |
| 54 | |
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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 597fa3df643b54ea93a17448c722f657e3d68b60
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55 I would like to thank Marius van den Beek and Björn Grüning for their contributions to this project. |
